Pavir.J23516 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J23516 T298988_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Traes_5BL_CC18CAD72
M11085_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC691_01 		0.941 0.848
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J23516.1.p NAC/NAM 12 138

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_5BL_CC18CAD72 Triticum aestivum Traes_5BL_CC18CAD72 D 0.941
mgf022118m Mimulus guttatus mgf022118m I 0.882
Sb05g001580 Sorghum bicolor Sb05g001580 I 0.950
Sb08g001940 Sorghum bicolor Sb08g001940 I 0.954
SELMODRAFT_133982 Selaginella moellendorffii SELMODRAFT_133982 I 0.876
SELMODRAFT_47266 Selaginella moellendorffii SELMODRAFT_47266 I 0.876
Si010410m.g Setaria italica Si010410m.g I 0.957
Si026530m.g Setaria italica Si026530m.g I 0.956
Si030267m.g Setaria italica Si030267m.g I 0.872
TCM_011671 Theobroma cacao TCM_011671 I 0.872
NAP Vitis vinifera VIT_01s0026g02710 I 0.880
Cla010367 Citrullus lanatus Cla010367 I 0.879
Pm006470 Prunus mume Pm006470 I 0.881
29813.m001519 Ricinus communis 29813.m001519 I 0.876
cassava1317.valid.m1 Manihot esculenta cassava1317.valid.m1 I 0.876
Cucsa.284890 Cucumis sativus Cucsa.284890 I 0.879
PRUPE_ppa009530mg Prunus persica PRUPE_ppa009530mg I 0.881
Ciclev10032304m.g Citrus clementina Ciclev10032304m.g I 0.875
Eucgr.G02486 Eucalyptus grandis Eucgr.G02486 I 0.876
Gorai.005G142300 Gossypium raimondii Gorai.005G142300 I 0.876
Gorai.008G179900 Gossypium raimondii Gorai.008G179900 I 0.879
Lus10036773.g Linum usitatissimum Lus10036773.g I 0.878
Lus10037156.g Linum usitatissimum Lus10037156.g I 0.879
MDP0000262990 Malus domestica MDP0000262990 I 0.871
MDP0000481448 Malus domestica MDP0000481448 I 0.882
orange1.1g023197m.g Citrus sinensis orange1.1g023197m.g I 0.875
Pavir.Ea00837 Panicum virgatum Pavir.Ea00837 I 0.876
Pavir.J23256 Panicum virgatum Pavir.J23256 I 0.871
SapurV1A.0801s0090 Salix purpurea SapurV1A.0801s0090 I 0.874
PK25119.1 Cannabis sativa PK25119.1 I 0.879
chr1.CM0104.240.nc Lotus japonicus chr1.CM0104.240.nc I 0.872
OBART11G01590 Oryza barthii OBART11G01590 I 0.941
BGIOSGA036918 Oryza indica BGIOSGA036918 I 0.941
BGIOSGA036920 Oryza indica BGIOSGA036920 I 0.942
F775_26965 Aegilops tauschii F775_26965 I 0.941
GRMZM2G109627 Zea mays GRMZM2G109627 I 0.872
GRMZM2G127379 Zea mays GRMZM2G127379 I 0.915
GRMZM2G430849 Zea mays GRMZM2G430849 I 0.874
GSMUA_Achr3G18010_001 Musa acuminata GSMUA_Achr3G18010_001 I 0.874
GSMUA_Achr6G32320_001 Musa acuminata GSMUA_Achr6G32320_001 I 0.894
GSMUA_AchrUn_randomG17360_001 Musa acuminata GSMUA_AchrUn_randomG17360_001 I 0.903
LPERR11G01300 Leersia perrieri LPERR11G01300 I 0.887
LPERR12G01440 Leersia perrieri LPERR12G01440 I 0.888
MLOC_4747 Hordeum vulgare MLOC_4747 I 0.941
OB11G11210 Oryza brachyantha OB11G11210 I 0.953
OB12G11500 Oryza brachyantha OB12G11500 I 0.954
BGIOSGA034713 Oryza indica BGIOSGA034713 I 0.941
OBART12G01290 Oryza barthii OBART12G01290 I 0.941
OGLUM11G01310 Oryza glumaepatula OGLUM11G01310 I 0.941
OGLUM12G01870 Oryza glumaepatula OGLUM12G01870 I 0.941
OLONG_020632 Oryza longistaminata OLONG_020632 I 0.940
OLONG_026749 Oryza longistaminata OLONG_026749 I 0.942
OMERI12G00480 Oryza meridionalis OMERI12G00480 I 0.933
ONIVA11G01630 Oryza nivara ONIVA11G01630 I 0.941
OPUNC11G01330 Oryza punctata OPUNC11G01330 I 0.951
OPUNC12G01370 Oryza punctata OPUNC12G01370 I 0.951
ORGLA12G0011400 Oryza glaberrima ORGLA12G0011400 I 0.941
ORUFI12G01570 Oryza rufipogon ORUFI12G01570 I 0.918
OS11G0126900 Oryza sativa OS11G0126900 I 0.941
OS12G0123700 Oryza sativa OS12G0123700 I 0.942
PGSC0003DMG400018435 Solanum tuberosum PGSC0003DMG400018435 I 0.871