CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG20542
(
Caenorhabditis briggsae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBG20542
T301591_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
XP_002647782.1
M02420_2.00
Caenorhabditis briggsae
Transfac license required
NYGTAGYN
Transfac license required
NRCTACRN
PBM
Weirauch et al.(2014)
pTH5737
0.225
1.000
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG20542
Nuclear receptor
2
40
GQSYDCLGDGVKPCKIDHTLRINCRHCRLKKCLRAGMVR
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis briggsae
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
XP_002647782.1
Caenorhabditis briggsae
XP_002647782.1
D
0.225