VDR (Anolis carolinensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSACAG00000013485 T302399_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.989 0.871
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.987 0.943
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.987 0.943
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.987 0.943
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.987 0.943
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.987 0.943
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.987 0.943
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.987 0.943
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.987 0.943
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.987 0.943
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.953 0.671
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.953 0.671
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.953 0.671
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.953 0.671
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.910 0.629
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.880 0.643
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.825 0.629
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.825 0.629
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.825 0.629
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.825 0.629
nr1h5.S
M11194_2.00 		Xenopus laevis Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FXRIR1_Q6 		0.814 0.543
EcR
M06414_2.00 		Drosophila melanogaster
RAGGTCAW
WTGACCTY		 B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546 		0.807 0.529
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.798 0.586
THRB
M03379_2.00 		Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_1 		0.791 0.500
THRB
M03380_2.00 		Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_2 		0.791 0.500
THRB
M03381_2.00 		Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN		 SELEX
Jolma et al.(2013)
THRB_3 		0.791 0.500
THRB
M05629_2.00 		Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1 		0.791 0.500
THRB
M05630_2.00 		Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2 		0.791 0.500
THRB
M05633_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1 		0.791 0.500
THRB
M05634_2.00 		Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2 		0.791 0.500
THRB
M09285_2.00 		Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB		 Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C 		0.791 0.500
THRB
M11150_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01 		0.791 0.500
THRB
M05631_2.00 		Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1 		0.791 0.500
THRB
M05632_2.00 		Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2 		0.791 0.500
THRB
M05635_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1 		0.791 0.500
THRB
M05636_2.00 		Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2 		0.791 0.500
GAG_AVIER
M11193_2.00 		Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB		 Transfac
Matys et al.(2006)
V$T3R_01 		0.790 0.486
THRA
M03368_2.00 		Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH		 SELEX
Jolma et al.(2013)
THRA_1 		0.775 0.486
THRA
M09275_2.00 		Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY		 Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C 		0.775 0.486
Thra
M09333_2.00 		Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB		 Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C 		0.775 0.486
Thra
M09619_2.00 		Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC		 Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347 		0.775 0.486
THRA
M11135_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RALPHA_Q6 		0.775 0.486
Hr4
M06435_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546 		0.774 0.486
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000013307 Nuclear receptor 45 114

Links

Other Nuclear receptor family TFs
Other Anolis carolinensis TFs

546 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PV10_08266 Exophiala mesophila PV10_08266 N
M437DRAFT_75276 Aureobasidium melanogenum M437DRAFT_75276 N
M438DRAFT_372082 Aureobasidium pullulans M438DRAFT_372082 N
MPH_06015 Macrophomina phaseolina MPH_06015 N
PTRG_03145 Pyrenophora triticirepentis PTRG_03145 N
PTT_13566 Pyrenophora teres PTT_13566 N
PV05_08216 Exophiala xenobiotica PV05_08216 N
PV06_01931 Exophiala oligosperma PV06_01931 N
PV07_03010 Cladophialophora immunda PV07_03010 N
PV08_02666 Exophiala spinifera PV08_02666 N
PV09_06681 Verruconis gallopava PV09_06681 N
LEMA_P037490.1 Leptosphaeria maculans LEMA_P037490.1 N
PV11_07147 Exophiala sideris PV11_07147 N
PVAR5_4302 Byssochlamys spectabilis PVAR5_4302 N
SEPMUDRAFT_58051 Sphaerulina musiva SEPMUDRAFT_58051 N
SETTUDRAFT_162963 Setosphaeria turcica SETTUDRAFT_162963 N
UCRNP2_5033 Neofusicoccum parvum UCRNP2_5033 N
Z517_05635 Fonsecaea pedrosoi Z517_05635 N
Z518_05835 Rhinocladiella mackenziei Z518_05835 N
Z519_08017 Cladophialophora bantiana Z519_08017 N
fgenesh1_pg.00009_#_431 Aspergillus carbonarius fgenesh1_pg.00009_#_431 N
COCC4DRAFT_55380 Bipolaris maydis COCC4DRAFT_55380 N
A1O1_06543 Capronia coronata A1O1_06543 N
A1O3_09900 Capronia epimyces A1O3_09900 N
A1O5_05128 Cladophialophora psammophila A1O5_05128 N
A1O7_06461 Cladophialophora yegresii A1O7_06461 N
A1O9_11059 Exophiala aquamarina A1O9_11059 N
AUEXF2481DRAFT_142262 Aureobasidium subglaciale AUEXF2481DRAFT_142262 N
ACLA_051570 Aspergillus clavatus CADACLAG00004490 N
AFUA_4G12570 Aspergillus fumigatus CADAFUAG00007816 N
CADANGAG00000804 Aspergillus niger CADANGAG00000804 N
ATEG_03142 Aspergillus terreus CADATEAG00010079 N
CIMG_07019 Coccidioides immitis CIMG_07019 N
COCCADRAFT_99015 Bipolaris zeicola COCCADRAFT_99015 N
COCMIDRAFT_99482 Bipolaris oryzae COCMIDRAFT_99482 N
COCSADRAFT_211993 Bipolaris sorokiniana COCSADRAFT_211993 N
COCVIDRAFT_21525 Bipolaris victoriae COCVIDRAFT_21525 N
CPC735_033770 Coccidioides posadasii CPC735_033770 N
DOTSEDRAFT_68895 Dothistroma septosporum DOTSEDRAFT_68895 N
EURHEDRAFT_517376 Aspergillus ruber EURHEDRAFT_517376 N
G647_06072 Cladophialophora carrionii G647_06072 N
HMPREF1120_04204 Exophiala dermatitidis HMPREF1120_04204 N