CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-46
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00003636
T306160_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in hypodermis; intestine; muscle cell; neurons; and reproductive system. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-46
M00692_2.00
Caenorhabditis elegans
NNNDWNHRN
NYDNWHNNN
PBM
Narasimhan et al.(2015)
pTH9924
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.745
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00692_2.00
Nuclear receptor
51
121
ERCVGCGSESAIRVHYGASSCHGCKAFFRRSVFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNP
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C45E5.6a.1
Nuclear receptor
96
166
ERCVGCGSESAIRVHYGASSCHGCKAFFRRSVFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6a.2
Nuclear receptor
96
166
ERCVGCGSESAIRVHYGASSCHGCKAFFRRSVFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6b
Nuclear receptor
144
214
ERCVGCGSESAIRVHYGASSCHGCKAFFRRSVFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6c.1
Nuclear receptor
1
33
MCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6c.2
Nuclear receptor
1
33
MCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6c.3
Nuclear receptor
1
33
MCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6c.4
Nuclear receptor
1
33
MCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6c.5
Nuclear receptor
1
33
MCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6c.6
Nuclear receptor
1
33
MCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6d.1
Nuclear receptor
99
169
ERCVGCGSESAIRVHYGASSCHGCKAFFRRSVFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNP
C45E5.6d.2
Nuclear receptor
99
169
ERCVGCGSESAIRVHYGASSCHGCKAFFRRSVFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy