Alligator_sinensis_CCG020979.1 (Alligator sinensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Alligator_sinensis_CCG020979.1 T306556_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.988 0.914
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.988 0.914
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.977 0.900
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.977 0.900
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.977 0.900
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.977 0.886
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.974 0.886
NR2E3
M00371_2.00 		Homo sapiens
NNNHAATWTRTNN
NNAYAWATTDNNN		 PBM
Barrera et al.(2016)
NR2E3_R76W 		0.969 0.886
NR2E3
M00369_2.00 		Homo sapiens
NGGGRTCAHN
NDTGAYCCCN		 PBM
Barrera et al.(2016)
NR2E3_G56R 		0.964 0.886
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020979.1 Nuclear receptor 33 103

Links

Other Nuclear receptor family TFs
Other Alligator sinensis TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAPG_05500 Magnaporthe poae MAPG_05500 I
VDAG_09245 Verticillium dahliae VDAG_09245 I
W97_08993 Coniosporium apollinis W97_08993 I
YALI0_C16863g Yarrowia lipolytica YALI0_C16863g I
MYCTH_2301171 Myceliophthora thermophila MYCTH_2301171 I
MPH_13584 Macrophomina phaseolina MPH_13584 I
MPH_13454 Macrophomina phaseolina MPH_13454 I
MPH_06322 Macrophomina phaseolina MPH_06322 I
MGG_04009 Magnaporthe oryzae MGG_04009 I
V499_05475 Pseudogymnoascus pannorum V499_05475 I
M7I_5710 Glarea lozoyensis M7I_5710 I
LEMA_P011200.1 Leptosphaeria maculans LEMA_P011200.1 I
HPODL_04325 Ogataea parapolymorpha HPODL_04325 I
GSTUM_00007619001 Tuber melanosporum GSTUM_00007619001 I
GMDG_05754 Pseudogymnoascus destructans GMDG_05754 I
GLRG_05013 Colletotrichum graminicola GLRG_05013 I
EURHEDRAFT_518114 Aspergillus ruber EURHEDRAFT_518114 I
GGTG_00729 Gaeumannomyces graminis GGTG_00729 I
UCRNP2_3513 Neofusicoccum parvum UCRNP2_3513 I
PTRG_01994 Pyrenophora triticirepentis PTRG_01994 I
PTT_20062 Pyrenophora teres PTT_20062 I
TRIVIDRAFT_81080 Trichoderma virens TRIVIDRAFT_81080 I
TRIATDRAFT_302381 Trichoderma atroviride TRIATDRAFT_302381 I
SNOG_03247 Phaeosphaeria nodorum SNOG_03247 I
SMAC_07031 Sordaria macrospora SMAC_07031 I
SJAG_01725 Schizosaccharomyces japonicus SJAG_01725 I
S40285_05885 Stachybotrys chlorohalonata S40285_05885 I
S40285_09291 Stachybotrys chlorohalonata S40285_09291 I
S40285_09500 Stachybotrys chlorohalonata S40285_09500 I
S40285_09586 Stachybotrys chlorohalonata S40285_09586 I
S40288_09816 Stachybotrys chartarum S40288_09816 I
SAPIO_CDS8346 Scedosporium apiospermum SAPIO_CDS8346 I
SETTUDRAFT_163700 Setosphaeria turcica SETTUDRAFT_163700 I
CH063_08162 Colletotrichum higginsianum CH063_08162 I
AB08404.1 Alternaria brassicicola AB08404.1 I
ACLA_085340 Aspergillus clavatus CADACLAG00007900 I
fgeneshPB_pg.6__495 Phycomyces blakesleeanus fgeneshPB_pg.6__495 I
fgeneshPB_pg.5__109 Phycomyces blakesleeanus fgeneshPB_pg.5__109 I
fgeneshMC_pg.8_#_226 Mucor circinelloides fgeneshMC_pg.8_#_226 I
CADANGAG00010459 Aspergillus niger CADANGAG00010459 I
fgeneshMC_pg.6_#_568 Mucor circinelloides fgeneshMC_pg.6_#_568 I
ACRE_055860 Acremonium chrysogenum ACRE_055860 I
fgenesh1_pm.00710_#_213 Aspergillus carbonarius fgenesh1_pm.00710_#_213 I
estExt_fgeneshMC_kg.C_40292 Mucor circinelloides estExt_fgeneshMC_kg.C_40292 I
fgenesh1_pm.00855_#_33 Aspergillus carbonarius fgenesh1_pm.00855_#_33 I
estExt_fgenesh1_pg.C_160071 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_160071 I
CFIO01_09097 Colletotrichum fioriniae CFIO01_09097 I
CGGC5_3848 Colletotrichum gloeosporioides CGGC5_3848 I
Cob_09143 Colletotrichum orbiculare Cob_09143 I
COCC4DRAFT_198125 Bipolaris maydis COCC4DRAFT_198125 I
COCCADRAFT_9860 Bipolaris zeicola COCCADRAFT_9860 I
COCMIDRAFT_31484 Bipolaris oryzae COCMIDRAFT_31484 I
RO3G_05311 Rhizopus oryzae RO3G_05311 I
COCSADRAFT_35045 Bipolaris sorokiniana COCSADRAFT_35045 I
COCVIDRAFT_101321 Bipolaris victoriae COCVIDRAFT_101321 I
CSUB01_03969 Colletotrichum sublineola CSUB01_03969 I
CTHT_0028870 Chaetomium thermophilum CTHT_0028870 I
CTHT_0051900 Chaetomium thermophilum CTHT_0051900 I
EPUS_02009 Endocarpon pusillum EPUS_02009 I
SPPG_03108 Spizellomyces punctatus SPPG_03108 I
SNOG_03247 Stagonospora nodorum SNOG_03247 I
estExt_fgenesh2_pg.C_10795 Neurospora discreta estExt_fgenesh2_pg.C_10795 N
ts Neurospora crassa NCU01459 N
TSTA_063900 Talaromyces stipitatus TSTA_063900 N
U727_0043104091 Penicillium solitum U727_0043104091 N
Z518_05320 Rhinocladiella mackenziei Z518_05320 N
Z517_04994 Fonsecaea pedrosoi Z517_04994 N
Z519_01463 Cladophialophora bantiana Z519_01463 N
PMAA_033690 Penicillium marneffei PMAA_033690 N
EURHEDRAFT_410838 Aspergillus ruber EURHEDRAFT_410838 N
A1O3_05442 Capronia epimyces A1O3_05442 N
A1O5_01997 Cladophialophora psammophila A1O5_01997 N
A1O9_08196 Exophiala aquamarina A1O9_08196 N
ACLA_015960 Aspergillus clavatus CADACLAG00001412 N
ACLA_018140 Aspergillus clavatus CADACLAG00001892 N
CADAFLAG00009086 Aspergillus flavus CADAFLAG00009086 N
AFUA_5G12960 Aspergillus fumigatus CADAFUAG00006537 N
AFUA_1G17360 Aspergillus fumigatus CADAFUAG00007041 N
CADANGAG00011562 Aspergillus niger CADANGAG00011562 N
CADAORAG00011548 Aspergillus oryzae CADAORAG00011548 N
NFIA_007990 Neosartorya fischeri CADNFIAG00001030 N
NFIA_074120 Neosartorya fischeri CADNFIAG00008273 N
EURHEDRAFT_381215 Aspergillus ruber EURHEDRAFT_381215 N
PVAR5_3861 Byssochlamys spectabilis PVAR5_3861 N
MGG_02006 Magnaporthe oryzae MGG_02006 N
NEUTE1DRAFT_75644 Neurospora tetrasperma NEUTE1DRAFT_75644 N
PCH_Pc21g08330 Penicillium rubens PCH_Pc21g08330 N
PDE_07392 Penicillium oxalicum PDE_07392 N
PDIP_58720 Penicillium digitatum PDIP_58720 N
PEX1_057360 Penicillium expansum PEX1_057360 N
PITC_074100 Penicillium italicum PITC_074100 N
PMAA_033690 Talaromyces marneffei PMAA_033690 N
PV06_07351 Exophiala oligosperma PV06_07351 N
PV07_01068 Cladophialophora immunda PV07_01068 N
PV08_01620 Exophiala spinifera PV08_01620 N
PV11_02987 Exophiala sideris PV11_02987 N