CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SMU15015045 *(Schmidtea mediterranea)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00105 (zf-C4)	IPR001628	SMU15015045	T307192_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
dsf M06431_2.00	Drosophila melanogaster	AAAAGTCANH	DNTGACTTTT	B1H Zhu et al.(2011) dsf_SANGER_5_FBgn0015381	0.968	0.814
NR2E1 M02394_2.00	Homo sapiens	NGAGGTCARN	NYTGACCTCN	PBM Weirauch et al.(2014) pTH6281	0.949	0.743
Nr2e1 M00814_2.00	Mus musculus	NNNGTYRNNN	NNNYRACNNN	PBM Weirauch et al.(2013) pTH2936	0.949	0.743
A1YGC6_PANPA M02421_2.00	Pan paniscus	NNGTCANNN	NNNTGACNN	PBM Weirauch et al.(2014) pTH5561	0.949	0.743
NR2E1 M03364_2.00	Homo sapiens	WDAAGTCAA	TTGACTTHW	SELEX Jolma et al.(2013) NR2E1_1	0.949	0.743
NR2E1 M03365_2.00	Homo sapiens	RARTCAWDAAGTCA	TGACTTHWTGAYTY	SELEX Jolma et al.(2013) NR2E1_2	0.949	0.743
Nr2e1 M03427_2.00	Mus musculus	WDAAGTCAW	WTGACTTHW	SELEX Jolma et al.(2013) Nr2e1_1	0.949	0.743
Nr2e1 M03428_2.00	Mus musculus	RRGTCAWDAAGTCA	TGACTTHWTGACYY	SELEX Jolma et al.(2013) Nr2e1_2	0.949	0.743
NR2E1 M05585_2.00	Homo sapiens	NNAAGTCAN	NTGACTTNN	SELEX Yin et al.(2017) NR2E1_FL_HT-SELEX	0.949	0.743
NR2E1 M05586_2.00	Homo sapiens	NDAAGTCAN	NTGACTTHN	SELEX Yin et al.(2017) NR2E1_FL_Methyl-HT-SELEX	0.949	0.743
tll M02408_2.00	Drosophila melanogaster	NRASGTCAANNN	NNNTTGACSTYN	PBM Weirauch et al.(2014) pTH5714	0.933	0.743
tll M03932_2.00	Drosophila melanogaster	NRAGTCAAAAGTCA	TGACTTTTGACTYN	SELEX Nitta et al.(2015) tll_1	0.933	0.743
tll M03933_2.00	Drosophila melanogaster	NRAGTCAADAAGTCA	TGACTTHTTGACTYN	SELEX Nitta et al.(2015) tll_2	0.933	0.743
tll M06558_2.00	Drosophila melanogaster	WAAAGTCAAM	KTTGACTTTW	B1H Mathelier et al.(2014) MA0459.1	0.933	0.743
tll M06424_2.00	Drosophila melanogaster	AAAGTYA	TRACTTT	B1H Zhu et al.(2011) tll_FlyReg_FBgn0003720	0.933	0.743
tll M06425_2.00	Drosophila melanogaster	WAAAGTCAAM	KTTGACTTTW	B1H Zhu et al.(2011) tll_NAR_FBgn0003720	0.933	0.743
tll M09688_2.00	Drosophila melanogaster	MAAAGTCAAH	DTTGACTTTK	Misc Kulakovskiy et al.(2009) tll	0.933	0.743
tll M11190_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$TLL_Q6	0.933	0.743
HNF4G M08155_2.00	Homo sapiens	NVRGDNCAAAGKYCA	TGRMCTTTGNHCYBN	ChIP-seq Mathelier et al.(2014) MA0484.1	0.863	0.614
HNF4G M09287_2.00	Homo sapiens	VRGDNCAAAGKYCA	TGRMCTTTGNHCYB	Misc Kulakovskiy et al.(2013) HNF4G_HUMAN.H11MO.0.B	0.863	0.614
Hnf4g M09307_2.00	Mus musculus	VRGDNCAAAGKYCA	TGRMCTTTGNHCYB	Misc Kulakovskiy et al.(2013) HNF4G_MOUSE.H11MO.0.C	0.863	0.614
HNF4G M11155_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4G_01	0.863	0.614
HNF4G M11156_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4G_02	0.863	0.614
Hnf4 M03935_2.00	Drosophila melanogaster	RGGKCAAAGGTCA	TGACCTTTGMCCY	SELEX Nitta et al.(2015) Hnf4_1	0.860	0.571
Hnf4 M03936_2.00	Drosophila melanogaster	RGGKCAAAGTYCA	TGRACTTTGMCCY	SELEX Nitta et al.(2015) Hnf4_2	0.860	0.571
Hnf4 M03937_2.00	Drosophila melanogaster	RGTVCAAAGKTCR	YGAMCTTTGBACY	SELEX Nitta et al.(2015) Hnf4_3	0.860	0.571
Hnf4 M03938_2.00	Drosophila melanogaster	RTGRACTTTGGACY	RGTCCAAAGTYCAY	SELEX Nitta et al.(2015) Hnf4_4	0.860	0.571
Hnf4 M06428_2.00	Drosophila melanogaster	DKNKWSSNGGGGTCA	TGACCCCNSSWMNMH	B1H Zhu et al.(2011) Hnf4_SANGER_10_FBgn0004914	0.860	0.571
Hnf4 M06429_2.00	Drosophila melanogaster	GGGGTCAH	DTGACCCC	B1H Zhu et al.(2011) Hnf4_SANGER_5_FBgn0004914	0.860	0.571
Hnf4a M00182_2.00	Mus musculus	NNRGKYMRNN	NNYKRMCYNN	PBM Badis et al.(2009) Hnf4a_2640	0.848	0.586
HNF4A M03357_2.00	Homo sapiens	RWTGRACTTTGSACYB	VRGTSCAAAGTYCAWY	SELEX Jolma et al.(2013) HNF4A_1	0.848	0.586
HNF4A M03358_2.00	Homo sapiens	RRGGKCAAAGTCCRBN	NVYGGACTTTGMCCYY	SELEX Jolma et al.(2013) HNF4A_2	0.848	0.586
HNF4A M03359_2.00	Homo sapiens	NDTGGACTTTGDACYB	VRGTHCAAAGTCCAHN	SELEX Jolma et al.(2013) HNF4A_3	0.848	0.586
HNF4A M03360_2.00	Homo sapiens	RRGGTCAAAGKTCA	TGAMCTTTGACCYY	SELEX Jolma et al.(2013) HNF4A_4	0.848	0.586
HNF4A M03361_2.00	Homo sapiens	VRGGTCAAAGTCCANN	NNTGGACTTTGACCYB	SELEX Jolma et al.(2013) HNF4A_5	0.848	0.586
HNF4A M03362_2.00	Homo sapiens	RRGTYCAAAGKTCAH	DTGAMCTTTGRACYY	SELEX Jolma et al.(2013) HNF4A_6	0.848	0.586
Hnf4a M03426_2.00	Mus musculus	RRGGTCAAAGTCCANN	NNTGGACTTTGACCYY	SELEX Jolma et al.(2013) Hnf4a_1	0.848	0.586
HNF4A M05573_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_1	0.848	0.586
HNF4A M05574_2.00	Homo sapiens	RRGGTCAAAGTCCAH	DTGGACTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_2	0.848	0.586
HNF4A M05575_2.00	Homo sapiens	RRGTCCAAAGGTCRN	NYGACCTTTGGACYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_3	0.848	0.586
HNF4A M05576_2.00	Homo sapiens	DTGGACTTTGGACYY	RRGTCCAAAGTCCAH	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_4	0.848	0.586
HNF4A M08219_2.00	Homo sapiens	VRGDBCAAAGKYCAN	NTGRMCTTTGVHCYB	ChIP-seq Contrino et al.(2012) Mv81	0.848	0.586
HNF4A M08220_2.00	Homo sapiens	AGTCCA	TGGACT	ChIP-seq Contrino et al.(2012) Mv82	0.848	0.586
HNF4A M09268_2.00	Homo sapiens	VRGKNCAAAGTYCA	TGRACTTTGNMCYB	Misc Kulakovskiy et al.(2013) HNF4A_HUMAN.H11MO.0.A	0.848	0.586
Hnf4a M09308_2.00	Mus musculus	NRGKBCAAAGTYCA	TGRACTTTGVMCYN	Misc Kulakovskiy et al.(2013) HNF4A_MOUSE.H11MO.0.A	0.848	0.586
HNF4A M09605_2.00	Homo sapiens	NNVRGDNCAAAGKYCA	TGRMCTTTGNHCYBNN	Misc Heinz et al.(2010) HepG2-HNF4a_GSE25021	0.848	0.586
HNF4A M11105_2.00	Homo sapiens	VRGGNCAAAGKYCRB	VYGRMCTTTGNCCYB	Transfac Matys et al.(2006) V$HNF4_01_B	0.848	0.586
HNF4A M11106_2.00	Homo sapiens	NNNRGDBYAAAGKBCANND	HNNTGVMCTTTRVHCYNNN	Transfac Matys et al.(2006) V$HNF4_01	0.848	0.586
HNF4A M11107_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_09	0.848	0.586
HNF4A M11108_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_10	0.848	0.586
HNF4A M11109_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4ALPHA_Q6	0.848	0.586
HNF4A M11110_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_Q3	0.848	0.586
HNF4A M11111_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_Q6_01	0.848	0.586
HNF4A M11112_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_01	0.848	0.586
HNF4A M11113_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_02	0.848	0.586
HNF4A M11114_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_03	0.848	0.586
HNF4A M11115_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_04	0.848	0.586
HNF4A M05577_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_1	0.848	0.586
HNF4A M05578_2.00	Homo sapiens	RRGGTCAAAGTCCRN	NYGGACTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_2	0.848	0.586
HNF4A M05579_2.00	Homo sapiens	RRGTCCAAAGGTCRN	NYGACCTTTGGACYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_3	0.848	0.586
HNF4A M05580_2.00	Homo sapiens	DTGGACTTTGGACYY	RRGTCCAAAGTCCAH	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_4	0.848	0.586
NR2E3 M00373_2.00	Homo sapiens	NRAGATCAMN	NKTGATCTYN	PBM Barrera et al.(2016) NR2E3_REF	0.776	0.643
Nr2e3 M02708_2.00	Mus musculus	AAGCTTD	HAAGCTT	SELEX Mathelier et al.(2014) MA0164.1	0.776	0.643
Nr2e3 M09328_2.00	Mus musculus	NAAGTCAAAARKCA	TGMYTTTTGACTTN	Misc Kulakovskiy et al.(2013) NR2E3_MOUSE.H11MO.0.C	0.776	0.643
NR2E3 M00370_2.00	Homo sapiens	NNNWRABATCANN	NNTGATVTYWNNN	PBM Barrera et al.(2016) NR2E3_R76Q	0.776	0.643
NR2E3 M00372_2.00	Homo sapiens	AAAGATCA	TGATCTTT	PBM Barrera et al.(2016) NR2E3_R77Q	0.776	0.643
Hr83 M06434_2.00	Drosophila melanogaster	RAAGTCANHVWVGM	KCBWBDNTGACTTY	B1H Zhu et al.(2011) Hr83_SANGER_5_FBgn0037436	0.774	0.514
NR2E3 M00371_2.00	Homo sapiens	NNNHAATWTRTNN	NNAYAWATTDNNN	PBM Barrera et al.(2016) NR2E3_R76W	0.762	0.643
GA30480 M02409_2.00	Drosophila pseudoobscura	RAGATCAM	KTGATCTY	PBM Weirauch et al.(2014) pTH5877	0.747	0.614
Hr51 M06432_2.00	Drosophila melanogaster	AMRDATCARARGW	WCYTYTGATHYKT	B1H Zhu et al.(2011) Hr51_SANGER_5_FBgn0034012	0.747	0.614
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
SMU15015045	Nuclear receptor	17	90	ILCKVCQDRSSGKHYGIYSCDGCSGFFKRSIHKHRTYSCKVQGEMKNKCPIDKTHRNQCRACRLRKCFDSGMNK

Links
Other Nuclear receptor family TFs
Other *Schmidtea mediterranea* TFs

657 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACOM028582	Anopheles coluzzii	ACOM028582	N
AEPI009744	Anopheles epiroticus	AEPI009744	N
AMEM010301	Anopheles merus	AMEM010301	N

SMU15015045 (Schmidtea mediterranea) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

657 Related TFs

SMU15015045 **(Schmidtea mediterranea)
Nuclear receptor**