HCOI00106000 (Haemonchus contortus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 HCOI00106000 T308766_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.976 0.671
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.976 0.671
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.976 0.671
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.976 0.671
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.976 0.671
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.976 0.671
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.975 0.671
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.975 0.671
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.975 0.671
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.975 0.671
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.975 0.671
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.975 0.671
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.975 0.671
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.975 0.671
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.975 0.671
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.975 0.671
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.975 0.671
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.975 0.671
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.975 0.671
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.975 0.671
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.975 0.671
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.975 0.671
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.975 0.671
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.975 0.671
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.975 0.671
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.975 0.671
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.975 0.671
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.975 0.671
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.975 0.671
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.975 0.671
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.975 0.671
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.975 0.671
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.975 0.671
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.975 0.671
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.975 0.671
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.975 0.671
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.975 0.671
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.975 0.671
HNF4G
M08155_2.00 		Homo sapiens
NVRGDNCAAAGKYCA
TGRMCTTTGNHCYBN		 ChIP-seq
Mathelier et al.(2014)
MA0484.1 		0.975 0.686
HNF4G
M09287_2.00 		Homo sapiens
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B 		0.975 0.686
Hnf4g
M09307_2.00 		Mus musculus
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C 		0.975 0.686
HNF4G
M11155_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_01 		0.975 0.686
HNF4G
M11156_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_02 		0.975 0.686
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.771 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HCOI00106000.t1 Nuclear receptor 4 73

Links

Other Nuclear receptor family TFs
Other Haemonchus contortus TFs

332 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NEMVEDRAFT_v1g136480 Nematostella vectensis NEMVEDRAFT_v1g136480 D
Pax6 Mus musculus ENSMUSG00000027168 D
ey Drosophila melanogaster FBgn0005558 D
CpipJ_CPIJ014198 Culex pipiens CpipJ_CPIJ014198 I
WUBG_04585 Wuchereria bancrofti WUBG_04585 I
ACEP15305 Atta cephalotes ACEP15305 I
ACEP19559 Atta cephalotes ACEP19559 I
ACYPI067723 Acyrthosiphon pisum ACYPI067723 I
BGIBMGA009546 Bombyx mori BGIBMGA009546 I
Bm3369 Brugia malayi Bm3369 I
CapteG228124 Capitella teleta CapteG228124 I
CBG04483 Caenorhabditis briggsae CBG04483 I
CJA11736 Caenorhabditis japonica CJA11736 I
CPIJ014198 Culex quinquefasciatus CPIJ014198 I
DAPPUDRAFT_9094 Daphnia pulex DAPPUDRAFT_9094 I
ENSACAG00000013797 Anolis carolinensis ENSACAG00000013797 I
ENSAMXG00000010055 Astyanax mexicanus ENSAMXG00000010055 I
ENSAMXG00000021103 Astyanax mexicanus ENSAMXG00000021103 I
ENSAPLG00000011062 Anas platyrhynchos ENSAPLG00000011062 I
PAX6 Choloepus hoffmanni ENSCHOG00000001954 I
pax3/7-like Ciona intestinalis ENSCING00000013561 I
ENSCSAVG00000005353 Ciona savignyi ENSCSAVG00000005353 I
pax10 Danio rerio ENSDARG00000053364 I
Pax3 Dipodomys ordii ENSDORG00000010324 I
PAX6 Erinaceus europaeus ENSEEUG00000014014 I
pax10 Gasterosteus aculeatus ENSGACG00000007835 I
ENSGMOG00000007260 Gadus morhua ENSGMOG00000007260 I
ENSLOCG00000017168 Lepisosteus oculatus ENSLOCG00000017168 I
ENSMGAG00000001533 Meleagris gallopavo ENSMGAG00000001533 I
ENSMGAG00000004645 Meleagris gallopavo ENSMGAG00000004645 I
ENSMLUG00000002244 Myotis lucifugus ENSMLUG00000002244 I
ENSONIG00000020082 Oreochromis niloticus ENSONIG00000020082 I
ENSPFOG00000004477 Poecilia formosa ENSPFOG00000004477 I
ENSPFOG00000006769 Poecilia formosa ENSPFOG00000006769 I
ENSPPYG00000029808 Pongo abelii ENSPPYG00000029808 I
PAX3 Vicugna pacos ENSVPAG00000000715 I
ENSXMAG00000017245 Xiphophorus maculatus ENSXMAG00000017245 I
HMEL012214 Heliconius melpomene HMEL012214 I
KGM_00017 Danaus plexippus KGM_00017 I
KGM_18864 Danaus plexippus KGM_18864 I
LOAG_18403 Loa loa LOAG_18403 I
LotgiG80560 Lottia gigantea LotgiG80560 I
MESCA001873 Megaselia scalaris MESCA001873 I
NEMVEDRAFT_v1g119152 Nematostella vectensis NEMVEDRAFT_v1g119152 I
PHUM217100 Pediculus humanus PHUM217100 I
Ppa-ceh-8 Pristionchus pacificus PPA03443 I
SINV15875 Solenopsis invicta SINV15875 I
SMAR006838 Strigamia maritima SMAR006838 I
SPU_006787 Strongylocentrotus purpuratus SPU_006787 I
WBGene00241133 Onchocerca volvulus WBGene00241133 I
YQE_05108 Dendroctonus ponderosae YQE_05108 I
YQE_06850 Dendroctonus ponderosae YQE_06850 I
YQE_12757 Dendroctonus ponderosae YQE_12757 I
YQE_12760 Dendroctonus ponderosae YQE_12760 I
Brh_R002767 Buceros rhinoceros Brh_R002767 I
Cflo_06474--XP_394848.3_APIME Camponotus floridanus Cflo_06474--XP_394848.3_APIME I
Cmyd_10010531 Chelonia mydas Cmyd_10010531 I
Tal_R002183 Tyto alba Tal_R002183 I
Tal_R002397 Tyto alba Tal_R002397 I
Ocbimv22007835m.g Octopus bimaculoides Ocbimv22007835m.g I
Ocbimv22021713m.g Octopus bimaculoides Ocbimv22021713m.g I
CLEC008732 Cimex lectularius CLEC008732 I
CLEC009744 Cimex lectularius CLEC009744 I
HHAL001220-PA Halyomorpha halys HHAL001220-PA I
HHAL002779-PA Halyomorpha halys HHAL002779-PA I
LCUP011798 Lucilia cuprina LCUP011798 I
LCUP013026 Lucilia cuprina LCUP013026 I
LCUP015672 Lucilia cuprina LCUP015672 I
LDEC009603 Leptinotarsa decemlineata LDEC009603 I
LDEC011614 Leptinotarsa decemlineata LDEC011614 I
SNAPOd2T00015303001 Oikopleura dioica SNAPOd2T00015303001 I
XP_002938577 Xenopus tropicalis XP_002938577 I
AALB001245 Anopheles albimanus AALB001245 I
AARA005848 Anopheles arabiensis AARA005848 I
ACHR005004 Anopheles christyi ACHR005004 I
ACHR007975 Anopheles christyi ACHR007975 I
ACUA006364 Anopheles culicifacies ACUA006364 I
ACUA016236 Anopheles culicifacies ACUA016236 I
ADIR009742 Anopheles dirus ADIR009742 I
AEPI007688 Anopheles epiroticus AEPI007688 I
AEPI009864 Anopheles epiroticus AEPI009864 I
AFAF020744 Anopheles farauti AFAF020744 I
AFUN002667 Anopheles funestus AFUN002667 I
AFUN004920 Anopheles funestus AFUN004920 I
AMAM010839 Anopheles maculatus AMAM010839 I
AMAM022462 Anopheles maculatus AMAM022462 I
AMEM005969 Anopheles merus AMEM005969 I
AMIN006554 Anopheles minimus AMIN006554 I
AQUA000003 Anopheles quadriannulatus AQUA000003 I
AQUA006727 Anopheles quadriannulatus AQUA006727 I
BGLB009051 Biomphalaria glabrata BGLB009051 I
LLOJ006069 Lutzomyia longipalpis LLOJ006069 I
A_06809 Schistosoma haematobium A_06809 I
ANCCAN_00245 Ancylostoma caninum ANCCAN_00245 I
ANCCEY_08415 Ancylostoma ceylanicum ANCCEY_08415 I
ANCDUO_04304 Ancylostoma duodenale ANCDUO_04304 I
ASU_08111 Ascaris suum ASU_08111 I
BTMF_0001218901 Brugia timori BTMF_0001218901 I
CGOC_0000172601 Cylicostephanus goldi CGOC_0000172601 I
D915_05710 Fasciola hepatica D915_05710 I
DICVIV_11711 Dictyocaulus viviparus DICVIV_11711 I
ECPE_0000989001 Echinostoma caproni ECPE_0000989001 I
EVEC_0000950501 Enterobius vermicularis EVEC_0000950501 I
GPUH_0000746301 Gongylonema pulchrum GPUH_0000746301 I
HPLM_0000341801 Haemonchus placei HPLM_0000341801 I
L889_g29911 Steinernema feltiae L889_g29911 I
L893_g1042 Steinernema glaseri L893_g1042 I
L898_g33070 Steinernema monticolum L898_g33070 I
nAv.1.0.1.g05049 Acanthocheilonema viteae nAv.1.0.1.g05049 I
NBR_0001845501 Nippostrongylus brasiliensis NBR_0001845501 I
nDi.2.2.2.g03676 Dirofilaria immitis nDi.2.2.2.g03676 I
NECAME_04523 Necator americanus NECAME_04523 I
nLs.2.1.2.g01340 Litomosoides sigmodontis nLs.2.1.2.g01340 I
nOo.2.0.1.g09807 Onchocerca ochengi nOo.2.0.1.g09807 I
nRc.2.0.1.g25805 Romanomermis culicivorax nRc.2.0.1.g25805 I
OESDEN_03125 Oesophagostomum dentatum OESDEN_03125 I
OFLC_0000197901 Onchocerca flexuosa OFLC_0000197901 I
SMTD_0001329401 Schistosoma mattheei SMTD_0001329401 I
SMUV_0001111201 Syphacia muris SMUV_0001111201 I
SROB_0000988801 Schistosoma rodhaini SROB_0000988801 I
TCLT_0000211001 Thelazia callipaeda TCLT_0000211001 I
TELCIR_00312 Teladorsagia circumcincta TELCIR_00312 I
TRE_0000697601 Trichobilharzia regenti TRE_0000697601 I
ENSCSAVG00000004794 Ciona savignyi ENSCSAVG00000004794 I
vab-3 Caenorhabditis elegans WBGene00006870 I
L596_g12356 Steinernema carpocapsae L596_g12356 I
PRRX1 Pteropus vampyrus ENSPVAG00000007390 N
ENSTNIG00000000660 Tetraodon nigroviridis ENSTNIG00000000660 N
Smp_142440 Schistosoma mansoni Smp_142440 N
WBGene00247364 Onchocerca volvulus WBGene00247364 N
A_02894 Schistosoma haematobium A_02894 N
BTMF_0001220401 Brugia timori BTMF_0001220401 N
DILT_0000408901 Diphyllobothrium latum DILT_0000408901 N
EEL_0000119001 Elaeophora elaphi EEL_0000119001 N
Hba_09393 Heterorhabditis bacteriophora Hba_09393 N
maker-nMf.1.1.scaf02133-snap-gene-0.11 Meloidogyne floridensis maker-nMf.1.1.scaf02133-snap-gene-0.11 N
maker-nMf.1.1.scaf03862-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf03862-augustus-gene-0.3 N
nAv.1.0.1.g00204 Acanthocheilonema viteae nAv.1.0.1.g00204 N
nOo.2.0.1.g04238 Onchocerca ochengi nOo.2.0.1.g04238 N
nRc.2.0.1.g45424 Romanomermis culicivorax nRc.2.0.1.g45424 N
OFLC_0001260901 Onchocerca flexuosa OFLC_0001260901 N
SPER_0001490801 Spirometra erinaceieuropaei SPER_0001490801 N
SPER_0001521401 Spirometra erinaceieuropaei SPER_0001521401 N