CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
MhA1_Contig988.frz3.gene1
(
Meloidogyne hapla
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
MhA1_Contig988.frz3.gene1
T309680_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig988.frz3.gene1
Nuclear receptor
54
123
TKCCICGYICSGYVFYNVVCCDGCKHFFRRWLITRKYFVCKYDGTCELVNVTKKCKSCRFDKCLLMGMNV
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne hapla
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
augustus_masked-nMf.1.1.scaf06920-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06920-processed-gene-0.0
N
0.897
MhA1_Contig790.frz3.gene5
Meloidogyne hapla
MhA1_Contig790.frz3.gene5
N
0.882
MhA1_Contig790.frz3.gene2
Meloidogyne hapla
MhA1_Contig790.frz3.gene2
N
0.882
MhA1_Contig41.frz3.gene12
Meloidogyne hapla
MhA1_Contig41.frz3.gene12
N
0.918
MhA1_Contig2339.frz3.gene2
Meloidogyne hapla
MhA1_Contig2339.frz3.gene2
N
0.884
MhA1_Contig2339.frz3.gene1
Meloidogyne hapla
MhA1_Contig2339.frz3.gene1
N
0.834
MhA1_Contig1386.frz3.gene10
Meloidogyne hapla
MhA1_Contig1386.frz3.gene10
N
0.958
maker-nMf.1.1.scaf15444-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf15444-snap-gene-0.4
N
0.890
maker-nMf.1.1.scaf14574-augustus-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf14574-augustus-gene-0.4
N
0.822
maker-nMf.1.1.scaf11763-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf11763-augustus-gene-0.3
N
0.890
maker-nMf.1.1.scaf08255-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf08255-snap-gene-0.4
N
0.925
maker-nMf.1.1.scaf06196-snap-gene-0.8
Meloidogyne floridensis
maker-nMf.1.1.scaf06196-snap-gene-0.8
N
0.890
maker-nMf.1.1.scaf03265-augustus-gene-0.7
Meloidogyne floridensis
maker-nMf.1.1.scaf03265-augustus-gene-0.7
N
0.860
maker-nMf.1.1.scaf00198-snap-gene-0.24
Meloidogyne floridensis
maker-nMf.1.1.scaf00198-snap-gene-0.24
N
0.924
augustus_masked-nMf.1.1.scaf10396-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf10396-processed-gene-0.0
N
0.920
Minc02054
Meloidogyne incognita
Minc02054
N
0.747
Minc18991
Meloidogyne incognita
Minc18991
N
0.939
Minc18661
Meloidogyne incognita
Minc18661
N
0.876
Minc17667
Meloidogyne incognita
Minc17667
N
0.888
Minc17464
Meloidogyne incognita
Minc17464
N
0.858
Minc15189
Meloidogyne incognita
Minc15189
N
0.747
Minc14854
Meloidogyne incognita
Minc14854
N
0.822
Minc13448
Meloidogyne incognita
Minc13448
N
0.890
Minc13321
Meloidogyne incognita
Minc13321
N
0.858
Minc09140
Meloidogyne incognita
Minc09140
N
0.747
Minc07964
Meloidogyne incognita
Minc07964
N
0.747
Minc07962
Meloidogyne incognita
Minc07962
N
0.747
Minc04725
Meloidogyne incognita
Minc04725
N
0.890
Minc03976
Meloidogyne incognita
Minc03976
N
0.924