pax1b (Danio rerio)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSDARG00000073814 T311615_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.984 0.984
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.984 0.984
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.984 0.984
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.984 0.984
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.944 0.944
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.944 0.944
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.944 0.944
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.936 0.936
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.880 0.880
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.880 0.880
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.880 0.880
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.752 0.752
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.744 0.744
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.744 0.744
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.736 0.736
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.736 0.736
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.736 0.736
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.736 0.736
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.736 0.736
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.736 0.736
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.736 0.736
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.736 0.736
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.736 0.736
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.736 0.736
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.736 0.736
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.736 0.736
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.736 0.736
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.736 0.736
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.736 0.736
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.736 0.736
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.728 0.728
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.728 0.728
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.728 0.728
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.728 0.728
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.728 0.728
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.712 0.712
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.712 0.712
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000121471 Paired box 6 130

Links

Other Paired box family TFs
Other Danio rerio TFs

492 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZBTB26 Homo sapiens ENSG00000171448 D 0.000
ENSXMAG00000019575 Xiphophorus maculatus ENSXMAG00000019575 I 0.000
ZBTB26 Procavia capensis ENSPCAG00000010332 I 0.000
ENSPFOG00000001590 Poecilia formosa ENSPFOG00000001590 I 0.000
ENSPPYG00000019585 Pongo abelii ENSPPYG00000019585 I 0.000
ENSPSIG00000001041 Pelodiscus sinensis ENSPSIG00000001041 I 0.000
ZBTB26 Pan troglodytes ENSPTRG00000021341 I 0.000
ZBTB26 Pteropus vampyrus ENSPVAG00000017595 I 0.000
Zbtb26 Rattus norvegicus ENSRNOG00000009346 I 0.000
ENSSHAG00000008190 Sarcophilus harrisii ENSSHAG00000008190 I 0.000
ENSSSCG00000005577 Sus scrofa ENSSSCG00000005577 I 0.000
ENSSSCG00000005580 Sus scrofa ENSSSCG00000005580 I 0.000
ENSSTOG00000004739 Ictidomys tridecemlineatus ENSSTOG00000004739 I 0.000
ZBTB26 Taeniopygia guttata ENSTGUG00000018200 I 0.000
si:ch211-236k19.4 Tetraodon nigroviridis ENSTNIG00000011438 I 0.000
ZBTB26 Tursiops truncatus ENSTTRG00000016957 I 0.000
ENSPANG00000025839 Papio anubis ENSPANG00000025839 I 0.000
Aan_R009401 Calypte anna Aan_R009401 I 0.000
Afo_R013761 Aptenodytes forsteri Afo_R013761 I 0.000
Brh_R009359 Buceros rhinoceros Brh_R009359 I 0.000
Cmyd_10017122 Chelonia mydas Cmyd_10017122 I 0.000
ENSBTAP00000040938-D2 Bos grunniens ENSBTAP00000040938-D2 I 0.000
ENSBTAP00000052774-D5 Bos grunniens ENSBTAP00000052774-D5 I 0.000
ENSP00000362760 Macaca fascicularis ENSP00000362760 I 0.000
Gfo_R007917 Geospiza fortis Gfo_R007917 I 0.000
Myotis_brandtii_ZBTB26_10028431 Myotis brandtii Myotis_brandtii_ZBTB26_10028431 I 0.000
Ogr13905 Ophisaurus gracilis Ogr13905 I 0.000
Pvit_08508 Pogona vitticeps Pvit_08508 I 0.000
Tal_R003614 Tyto alba Tal_R003614 I 0.000
zbtb26 Xenopus tropicalis XB-GENE-5891654 I 0.000
ENSGMOG00000002798 Gadus morhua ENSGMOG00000002798 I 0.000
ENSAPLG00000001864 Anas platyrhynchos ENSAPLG00000001864 I 0.000
ZBTB26 Bos taurus ENSBTAG00000038610 I 0.000
ZBTB26 Callithrix jacchus ENSCJAG00000021770 I 0.000
ENSCSAG00000019712 Chlorocebus sabaeus ENSCSAG00000019712 I 0.000
ZBTB26 Danio rerio ENSDARG00000028949 I 0.000
ZBTB26 Dasypus novemcinctus ENSDNOG00000045813 I 0.000
Zbtb26 Dipodomys ordii ENSDORG00000006402 I 0.000
ZBTB26 Equus caballus ENSECAG00000017397 I 0.000
ZBTB26 Echinops telfairi ENSETEG00000009868 I 0.000
ENSFALG00000014341 Ficedula albicollis ENSFALG00000014341 I 0.000
si:ch211-236k19.4 Gasterosteus aculeatus ENSGACG00000013351 I 0.000
ENSGALG00000001236 Gallus gallus ENSGALG00000001236 I 0.000
ZBTB26 Gorilla gorilla ENSGGOG00000015134 I 0.000
ENSAMXG00000025867 Astyanax mexicanus ENSAMXG00000025867 I 0.000
ZBTB26 Loxodonta africana ENSLAFG00000012394 I 0.000
ENSLOCG00000002911 Lepisosteus oculatus ENSLOCG00000002911 I 0.000
ENSMEUG00000015636 Macropus eugenii ENSMEUG00000015636 I 0.000
ZBTB26 Myotis lucifugus ENSMLUG00000014009 I 0.000
ZBTB26 Macaca mulatta ENSMMUG00000000495 I 0.000
ZBTB26 Monodelphis domestica ENSMODG00000023552 I 0.000
ENSMPUG00000019237 Mustela putorius furo ENSMPUG00000019237 I 0.000
Zbtb26 Mus musculus ENSMUSG00000050714 I 0.000
ENSNLEG00000017215 Nomascus leucogenys ENSNLEG00000017215 I 0.000
ENSOARG00000019156 Ovis aries ENSOARG00000019156 I 0.000
ZBTB26 Otolemur garnettii ENSOGAG00000010685 I 0.000
ZBTB26 Ochotona princeps ENSOPRG00000013334 I 0.000
si:ch211-236k19.4 Oryzias latipes ENSORLG00000015695 I 0.000