lcorl (Danio rerio)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSDARG00000070098 T313538_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		0.825 0.825
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000093375 Pipsqueak 49 84
ENSDARP00000128036 Pipsqueak 235 270
ENSDARP00000128036 Pipsqueak 492 537
ENSDARP00000133930 Pipsqueak 240 275
ENSDARP00000133930 Pipsqueak 484 529

Links

Other Pipsqueak family TFs
Other Danio rerio TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LCORL Homo sapiens ENSG00000178177 D 0.825
LCORL Tursiops truncatus ENSTTRG00000016951 I 0.825
LCORL Oryctolagus cuniculus ENSOCUG00000006802 I 0.825
LCORL Otolemur garnettii ENSOGAG00000005593 I 0.825
ENSPANG00000024022 Papio anubis ENSPANG00000024022 I 0.825
LCORL Procavia capensis ENSPCAG00000007105 I 0.825
ENSPSIG00000017051 Pelodiscus sinensis ENSPSIG00000017051 I 0.825
LCORL Pan troglodytes ENSPTRG00000015943 I 0.825
LCORL Pteropus vampyrus ENSPVAG00000013601 I 0.825
ENSSHAG00000015746 Sarcophilus harrisii ENSSHAG00000015746 I 0.825
LCORL Sus scrofa ENSSSCG00000008748 I 0.825
ENSSTOG00000000960 Ictidomys tridecemlineatus ENSSTOG00000000960 I 0.825
LCORL Taeniopygia guttata ENSTGUG00000009625 I 0.825
ENSTSYG00000014055 Tarsius syrichta ENSTSYG00000014055 I 0.825
ENSNLEG00000016679 Nomascus leucogenys ENSNLEG00000016679 I 0.825
LCORL Vicugna pacos ENSVPAG00000010356 I 0.825
Aan_R007397 Calypte anna Aan_R007397 I 0.825
Afo_R006360 Aptenodytes forsteri Afo_R006360 I 0.825
Alligator_sinensis_CCG006744.1 Alligator sinensis Alligator_sinensis_CCG006744.1 I 0.825
Brh_R013202 Buceros rhinoceros Brh_R013202 I 0.825
ENSP00000371661-D1 Bos grunniens ENSP00000371661-D1 I 0.825
ENSP00000371661 Macaca fascicularis ENSP00000371661 I 0.825
Gfo_R010322 Geospiza fortis Gfo_R010322 I 0.825
Myotis_brandtii_LCORL_10024397 Myotis brandtii Myotis_brandtii_LCORL_10024397 I 0.825
Ogr00836 Ophisaurus gracilis Ogr00836 I 0.812
Pvit_18026 Pogona vitticeps Pvit_18026 I 0.825
Tal_R001804 Tyto alba Tal_R001804 I 0.825
ENSFALG00000009227 Ficedula albicollis ENSFALG00000009227 I 0.825
ENSAMEG00000000192 Ailuropoda melanoleuca ENSAMEG00000000192 I 0.825
ENSAPLG00000006384 Anas platyrhynchos ENSAPLG00000006384 I 0.825
LCORL Bos taurus ENSBTAG00000046561 I 0.825
LCORL Canis familiaris ENSCAFG00000016672 I 0.825
LCORL Callithrix jacchus ENSCJAG00000012800 I 0.825
ENSCPOG00000003269 Cavia porcellus ENSCPOG00000003269 I 0.825
ENSCSAG00000016522 Chlorocebus sabaeus ENSCSAG00000016522 I 0.825
LCORL Dasypus novemcinctus ENSDNOG00000001545 I 0.825
ENSDORG00000003797 Dipodomys ordii ENSDORG00000003797 I 0.825
LCORL Equus caballus ENSECAG00000000648 I 0.825
LCORL Erinaceus europaeus ENSEEUG00000000419 I 0.825
ENSOARG00000004333 Ovis aries ENSOARG00000004333 I 0.825
LCORL Felis catus ENSFCAG00000029474 I 0.825
LCORL Gallus gallus ENSGALG00000014421 I 0.825
LCORL Gorilla gorilla ENSGGOG00000014894 I 0.825
ENSLACG00000017771 Latimeria chalumnae ENSLACG00000017771 I 0.838
LCORL Loxodonta africana ENSLAFG00000009691 I 0.812
LCORL Meleagris gallopavo ENSMGAG00000012554 I 0.825
ENSMICG00000008878 Microcebus murinus ENSMICG00000008878 I 0.825
LCORL Myotis lucifugus ENSMLUG00000013781 I 0.825
LCORL Monodelphis domestica ENSMODG00000000757 I 0.825
ENSMPUG00000002301 Mustela putorius furo ENSMPUG00000002301 I 0.825
Lcorl Mus musculus ENSMUSG00000015882 I 0.825
LCORL Anolis carolinensis ENSACAG00000002012 I 0.800