LCORL (Homo sapiens)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSG00000178177 T313553_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00		 Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		1.000 1.000
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		0.800 0.800
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.800 0.800
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01304_2.00 Pipsqueak 51 89
M01304_2.00 Pipsqueak 300 345

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000371659 Pipsqueak 193 231
ENSP00000371659 Pipsqueak 442 487
ENSP00000371661 Pipsqueak 526 571

Links

Other Pipsqueak family TFs
Other Homo sapiens TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TC013073 Tribolium castaneum TC013073 N 0.000
LDEC001191 Leptinotarsa decemlineata LDEC001191 N 0.000
LCUP008185 Lucilia cuprina LCUP008185 N 0.000
Sakowv30017448m.g Saccoglossus kowalevskii Sakowv30017448m.g N 0.000
Ocbimv22006527m.g Octopus bimaculoides Ocbimv22006527m.g N 0.000
fgenesh2_pg.scaffold_282000018 Branchiostoma floridae fgenesh2_pg.scaffold_282000018 N 0.000
Pvit_15291 Pogona vitticeps Pvit_15291 N 0.000
Ogr08710 Ophisaurus gracilis Ogr08710 N 0.000
ENSP00000406998 Macaca fascicularis ENSP00000406998 N 0.000
Alligator_sinensis_CCG009248.1 Alligator sinensis Alligator_sinensis_CCG009248.1 N 0.000
tetur11g03890 Tetranychus urticae tetur11g03890 N 0.000
SMU15028407 Schmidtea mediterranea SMU15028407 N 0.000
SMAR006435 Strigamia maritima SMAR006435 N 0.000
PHUM271650 Pediculus humanus PHUM271650 N 0.000
MCINX010301 Melitaea cinxia MCINX010301 N 0.000
LotgiG69958 Lottia gigantea LotgiG69958 N 0.000
L798_05037 Zootermopsis nevadensis L798_05037 N 0.000
KGM_11907 Danaus plexippus KGM_11907 N 0.000
ISCW009928 Ixodes scapularis ISCW009928 N 0.000
HMEL017852 Heliconius melpomene HMEL017852 N 0.000
ENSXMAG00000009993 Xiphophorus maculatus ENSXMAG00000009993 N 0.000
prdm8b Takifugu rubripes ENSTRUG00000001003 N 0.000
AFUN008026 Anopheles funestus AFUN008026 N 0.000
PPAI006396 Phlebotomus papatasi PPAI006396 N 0.000
MDOA007546 Musca domestica MDOA007546 N 0.000
ASTEI06883 Anopheles stephensi ASTEI06883 N 0.000
ASIS021384 Anopheles sinensis ASIS021384 N 0.000
AQUA002036 Anopheles quadriannulatus AQUA002036 N 0.000
AMIN011248 Anopheles minimus AMIN011248 N 0.000
AMEM014597 Anopheles merus AMEM014597 N 0.000
AMEC019433 Anopheles melas AMEC019433 N 0.000
AMEC009079 Anopheles melas AMEC009079 N 0.000
AMAM024265 Anopheles maculatus AMAM024265 N 0.000
prdm8b Tetraodon nigroviridis ENSTNIG00000016712 N 0.000
AFAF012484 Anopheles farauti AFAF012484 N 0.000
AEPI001699 Anopheles epiroticus AEPI001699 N 0.000
ADIR008055 Anopheles dirus ADIR008055 N 0.000
ACUA006984 Anopheles culicifacies ACUA006984 N 0.000
ACHR001790 Anopheles christyi ACHR001790 N 0.000
AATE006171 Anopheles atroparvus AATE006171 N 0.000
AARA007771 Anopheles arabiensis AARA007771 N 0.000
AALB005765 Anopheles albimanus AALB005765 N 0.000
prdm8 Xenopus tropicalis XB-GENE-984391 N 0.000
ENSCSAG00000004478 Chlorocebus sabaeus ENSCSAG00000004478 N 0.000
ENSLOCG00000007226 Lepisosteus oculatus ENSLOCG00000007226 N 0.000
ENSLACG00000001866 Latimeria chalumnae ENSLACG00000001866 N 0.000
ENSGMOG00000016370 Gadus morhua ENSGMOG00000016370 N 0.000
PRDM8 Gorilla gorilla ENSGGOG00000007501 N 0.000
ENSGALG00000026560 Gallus gallus ENSGALG00000026560 N 0.000
PRDM8 Homo sapiens ENSG00000152784 N 0.000
ENSFCAG00000026794 Felis catus ENSFCAG00000026794 N 0.000
ENSECAG00000017767 Equus caballus ENSECAG00000017767 N 0.000
PRDM8 Dasypus novemcinctus ENSDNOG00000011667 N 0.000
prdm8b Danio rerio ENSDARG00000054683 N 0.000
ENSMEUG00000015872 Macropus eugenii ENSMEUG00000015872 N 0.000
PRDM8 Cavia porcellus ENSCPOG00000019738 N 0.000
PRDM8 Callithrix jacchus ENSCJAG00000015064 N 0.000
PRDM8 Canis familiaris ENSCAFG00000008881 N 0.000
ENSAMXG00000020060 Astyanax mexicanus ENSAMXG00000020060 N 0.000
PRDM8 Anolis carolinensis ENSACAG00000010106 N 0.000
CPIJ004963 Culex quinquefasciatus CPIJ004963 N 0.000
CapteG221467 Capitella teleta CapteG221467 N 0.000
BGIBMGA012741 Bombyx mori BGIBMGA012741 N 0.000
AGAP007109 Anopheles gambiae AGAP007109 N 0.000
AAEL003602 Aedes aegypti AAEL003602 N 0.000
prdm8b Oryzias latipes ENSORLG00000017786 N 0.000
PRDM8 Tupaia belangeri ENSTBEG00000006138 N 0.000
ENSSTOG00000015688 Ictidomys tridecemlineatus ENSSTOG00000015688 N 0.000
ENSSHAG00000018147 Sarcophilus harrisii ENSSHAG00000018147 N 0.000
PRDM8 Sorex araneus ENSSARG00000009823 N 0.000
Prdm8 Rattus norvegicus ENSRNOG00000002004 N 0.000
ENSPPYG00000014879 Pongo abelii ENSPPYG00000014879 N 0.000
ENSPMAG00000005756 Petromyzon marinus ENSPMAG00000005756 N 0.000
ENSPFOG00000011716 Poecilia formosa ENSPFOG00000011716 N 0.000
PRDM8 Procavia capensis ENSPCAG00000001081 N 0.000
ENSPANG00000024349 Papio anubis ENSPANG00000024349 N 0.000
CpipJ_CPIJ004963 Culex pipiens CpipJ_CPIJ004963 N 0.000
ENSONIG00000014038 Oreochromis niloticus ENSONIG00000014038 N 0.000
ENSOGAG00000026262 Otolemur garnettii ENSOGAG00000026262 N 0.000
ENSOARG00000018972 Ovis aries ENSOARG00000018972 N 0.000
ENSNLEG00000008504 Nomascus leucogenys ENSNLEG00000008504 N 0.000
Prdm8 Mus musculus ENSMUSG00000035456 N 0.000
ENSMPUG00000006558 Mustela putorius furo ENSMPUG00000006558 N 0.000
PRDM8 Monodelphis domestica ENSMODG00000020789 N 0.000
PRDM8 Macaca mulatta ENSMMUG00000003338 N 0.000
PRDM8 Myotis lucifugus ENSMLUG00000030190 N 0.000