LCOR (Pan troglodytes)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSPTRG00000002800 T313609_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000004902 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Pan troglodytes TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CHGG_00926 Chaetomium globosum CHGG_00926 N 0.000
FGRRES_05716_M Fusarium graminearum FGRRES_05716_M N 0.000
GGTG_03384 Gaeumannomyces graminis GGTG_03384 N 0.000
NechaG33692 Fusarium solani NechaG33692 N 0.000
PITC_016440 Penicillium italicum PITC_016440 N 0.000
S40285_09207 Stachybotrys chlorohalonata S40285_09207 N 0.000
SAPIO_CDS3191 Scedosporium apiospermum SAPIO_CDS3191 N 0.000
Z518_08215 Rhinocladiella mackenziei Z518_08215 N 0.000
Z518_09246 Rhinocladiella mackenziei Z518_09246 N 0.000
e_gw1.34.5.1 Cochliobolus heterostrophus C5 e_gw1.34.5.1 N 0.000