CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mbr-1
(
Caenorhabditis elegans
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF05225 (HTH_psq)
IPR007889
WBGene00011315
T314398_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including AUA; intestine; nerve ring neurons; tail; and vulva. Orthologous to human LCOR (ligand dependent nuclear receptor corepressor) and LCORL (ligand dependent nuclear receptor corepressor like). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
mbr-1
M00707_2.00
Caenorhabditis elegans
NRNGGGCCDN
NHGGCCCNYN
PBM
Narasimhan et al.(2015)
pTH10031
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.778
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00707_2.00
Pipsqueak
51
93
TVEDLTQAVEDIRQGKLGTRRASVVYGIPRSTLRNKIYKLEAE
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T01C1.2
Pipsqueak
155
197
TVEDLTQAVEDIRQGKLGTRRASVVYGIPRSTLRNKIYKLEAE
Links
Other
Pipsqueak
family TFs
Other
Caenorhabditis elegans
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy