CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nfat5b
(
Danio rerio
)
Rel
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00554 (RHD_DNA_bind)
IPR011539
ENSDARG00000102556
T317108_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Orthologous to human NFAT5 (nuclear factor of activated T cells 5). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSGALG00000000671
M02442_2.00
Gallus gallus
NWTTTCCAYN
NRTGGAAAWN
PBM
Weirauch et al.(2014)
pTH9263
0.875
0.875
NFAT5
M03447_2.00
Homo sapiens
NDGTAMWTTTCCAY
RTGGAAAWKTACHN
SELEX
Jolma et al.(2013)
NFAT5_1
0.875
0.875
NFAT5
M05709_2.00
Homo sapiens
NGTANNWTTCCRY
RYGGAAWNNTACN
SELEX
Yin et al.(2017)
NFAT5_eDBD_HT-SELEX
0.875
0.875
NFAT5
M11224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT5_Q5_01
0.875
0.875
NFAT5
M11225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT5_Q5_02
0.875
0.875
NFAT5
M11226_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT5_Q5_03
0.875
0.875
NFAT5
M05710_2.00
Homo sapiens
NGTRNNTTTCCRY
RYGGAAANNYACN
SELEX
Yin et al.(2017)
NFAT5_eDBD_Methyl-HT-SELEX
0.875
0.875
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000131570
Rel
247
404
LKIVVQPETQHRARYLTEGSRGSVKDQTQQGFPTIKLEGVKESVVMQIFVGNDAGRVKPHGFYQACRVTGRNTTACREVDIEGTTVIEVPMDPSSNMTLPVDCVGILKLRNADVEARIGVAGSKKKSTRARLVFRVNIPRPDGSALTLQTSSSPILCT
ENSDARP00000133380
Rel
271
428
LKIVVQPETQHRARYLTEGSRGSVKDQTQQGFPTIKLEGVKESVVMQIFVGNDAGRVKPHGFYQACRVTGRNTTACREVDIEGTTVIEVPMDPSSNMTLPVDCVGILKLRNADVEARIGVAGSKKKSTRARLVFRVNIPRPDGSALTLQTSSSPILCT
Links
Other
Rel
family TFs
Other
Danio rerio
TFs
77 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy