CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSPSIG00000011711 *(Pelodiscus sinensis)* Rel
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00554 (RHD_DNA_bind)	IPR011539	ENSPSIG00000011711	T317450_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Nfatc1 M09360_2.00	Mus musculus	KABTCANWBTTTCCW	WGGAAAVWNTGAVTM	Misc Kulakovskiy et al.(2013) NFAC1_MOUSE.H11MO.0.A	0.979	0.979
NFATC1 M02443_2.00	Meleagris gallopavo	NNTTTCCRNN	NNYGGAAANN	PBM Weirauch et al.(2014) pTH8315	0.965	0.965
nfatc1 M02446_2.00	Xenopus tropicalis	NNTTTCCRNN	NNYGGAAANN	PBM Weirauch et al.(2014) pTH8557	0.951	0.951
NFATC1 M02444_2.00	Monodelphis domestica	NNDTTCCDNN	NNHGGAAHNN	PBM Weirauch et al.(2014) pTH8401	0.944	0.944
NFATC1 M03449_2.00	Homo sapiens	HKGRAAADDNWBTTTCCAYN	NRTGGAAAVWNHHTTTYCMD	SELEX Jolma et al.(2013) NFATC1_1	0.909	0.909
NFATC1 M03450_2.00	Homo sapiens	TTTCCAYWRYGGAAA	TTTCCRYWRTGGAAA	SELEX Jolma et al.(2013) NFATC1_2	0.909	0.909
NFATC1 M03451_2.00	Homo sapiens	NTTTCCATGGAAAN	NTTTCCATGGAAAN	SELEX Jolma et al.(2013) NFATC1_3	0.909	0.909
NFATC1 M02747_2.00	Homo sapiens	DTTCCRYGGAA	TTCCRYGGAAH	SELEX Jolma et al.(2010) NFATc1_dimer	0.909	0.909
NFATC1 M02748_2.00	Homo sapiens	GGAANDTTCC	GGAAHNTTCC	SELEX Jolma et al.(2010) NFATc1_dimer_type2	0.909	0.909
NFATC1 M02749_2.00	Homo sapiens	WDTTTCCAY	RTGGAAAHW	SELEX Jolma et al.(2010) NFATc1_monomer	0.909	0.909
NFATC1 M05711_2.00	Homo sapiens	NTTTCCATGGAAAN	NTTTCCATGGAAAN	SELEX Yin et al.(2017) NFATC1_eDBD_HT-SELEX_1	0.909	0.909
NFATC1 M05712_2.00	Homo sapiens	NTTTCCRYNNRYGGAAAN	NTTTCCRYNNRYGGAAAN	SELEX Yin et al.(2017) NFATC1_eDBD_HT-SELEX_2	0.909	0.909
NFATC1 M09349_2.00	Homo sapiens	HBYHWBWBTTTCCWB	VWGGAAAVWVWDRVD	Misc Kulakovskiy et al.(2013) NFAC1_HUMAN.H11MO.0.B	0.909	0.909
NFATC1 M09625_2.00	Homo sapiens	WBTTTCCAYY	RRTGGAAAVW	Misc Heinz et al.(2010) Jurkat-NFATC1_Jolma_et_al.	0.909	0.909
NFATC1 M11232_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT2_Q4	0.909	0.909
NFATC1 M11233_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT2_Q5_01	0.909	0.909
NFATC1 M11234_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT2_Q5	0.909	0.909
NFATC1 M05713_2.00	Homo sapiens	NTTTCCRYGGAAAN	NTTTCCRYGGAAAN	SELEX Yin et al.(2017) NFATC1_eDBD_Methyl-HT-SELEX_1	0.909	0.909
NFATC1 M05714_2.00	Homo sapiens	NTTTCCRYNNRYGGAAAN	NTTTCCRYNNRYGGAAAN	SELEX Yin et al.(2017) NFATC1_eDBD_Methyl-HT-SELEX_2	0.909	0.909
NFATC3 M02440_2.00	Homo sapiens	DNTTTCCRNN	NNYGGAAANH	PBM Weirauch et al.(2014) pTH9192	0.853	0.853
NFATC2 M02441_2.00	Homo sapiens	WNTTTCCRHN	NDYGGAAANW	PBM Weirauch et al.(2014) pTH9196	0.853	0.853
NFATC2 M05705_2.00	Homo sapiens	DTTTCCATGGAAAM	KTTTCCATGGAAAH	SELEX Yin et al.(2017) NFATC2_eDBD_HT-SELEX_1	0.853	0.853
NFATC2 M05706_2.00	Homo sapiens	NTTTCCRYNNRYGGAAAN	NTTTCCRYNNRYGGAAAN	SELEX Yin et al.(2017) NFATC2_eDBD_HT-SELEX_2	0.853	0.853
NFATC3 M05693_2.00	Homo sapiens	WNTTTCCRYN	NRYGGAAANW	SELEX Yin et al.(2017) NFATC3_eDBD_HT-SELEX_1	0.853	0.853
NFATC3 M05694_2.00	Homo sapiens	NTTTCCATGGAAAN	NTTTCCATGGAAAN	SELEX Yin et al.(2017) NFATC3_eDBD_HT-SELEX_2	0.853	0.853
NFATC3 M05695_2.00	Homo sapiens	DYGGAAANNNNNNNTTTCCRH	DYGGAAANNNNNNNTTTCCRH	SELEX Yin et al.(2017) NFATC3_eDBD_HT-SELEX_3	0.853	0.853
NFATC2 M09346_2.00	Homo sapiens	NWTTTTCCW	WGGAAAAWN	Misc Kulakovskiy et al.(2013) NFAC2_HUMAN.H11MO.0.B	0.853	0.853
NFATC3 M09343_2.00	Homo sapiens	RDTTTTCCA	TGGAAAAHY	Misc Kulakovskiy et al.(2013) NFAC3_HUMAN.H11MO.0.B	0.853	0.853
Nfatc2 M09357_2.00	Mus musculus	NWTTTTCCW	WGGAAAAWN	Misc Kulakovskiy et al.(2013) NFAC2_MOUSE.H11MO.0.C	0.853	0.853
Nfatc3 M09359_2.00	Mus musculus	RDTTTTCCA	TGGAAAAHY	Misc Kulakovskiy et al.(2013) NFAC3_MOUSE.H11MO.0.B	0.853	0.853
NFATC2 M11221_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT1_Q4	0.853	0.853
NFATC2 M11222_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT1_Q5	0.853	0.853
NFATC2 M11223_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT1_Q6	0.853	0.853
NFATC3 M11217_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT4_Q3	0.853	0.853
NFATC3 M11218_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT4_Q5	0.853	0.853
NFATC2 M08462_2.00	Homo sapiens	TTTTCCA	TGGAAAA	COMPILED Mathelier et al.(2014) MA0152.1	0.853	0.853
NFATC2 M05707_2.00	Homo sapiens	NTTTCCGCGGAAAN	NTTTCCGCGGAAAN	SELEX Yin et al.(2017) NFATC2_eDBD_Methyl-HT-SELEX_1	0.853	0.853
NFATC2 M05708_2.00	Homo sapiens	NTTTCCRYNNRYGGAAAN	NTTTCCRYNNRYGGAAAN	SELEX Yin et al.(2017) NFATC2_eDBD_Methyl-HT-SELEX_2	0.853	0.853
NFATC3 M05696_2.00	Homo sapiens	WNTTTCCRYN	NRYGGAAANW	SELEX Yin et al.(2017) NFATC3_eDBD_Methyl-HT-SELEX_1	0.853	0.853
NFATC3 M05697_2.00	Homo sapiens	NTTTCCRYGGAAAN	NTTTCCRYGGAAAN	SELEX Yin et al.(2017) NFATC3_eDBD_Methyl-HT-SELEX_2	0.853	0.853
NFATC3 M05698_2.00	Homo sapiens	RYGGAAANHNNNDNTTTCCRY	RYGGAAANHNNNDNTTTCCRY	SELEX Yin et al.(2017) NFATC3_eDBD_Methyl-HT-SELEX_3	0.853	0.853
NFATC4 M01306_2.00	Homo sapiens	NNNWWWVYRN	NYRBWWWNNN	PBM Lambert et al.(2019) pTH9347	0.804	0.804
NFATC4 M05701_2.00	Homo sapiens	DBTTTCCRYN	NRYGGAAAVH	SELEX Yin et al.(2017) NFATC4_eDBD_HT-SELEX_1	0.804	0.804
NFATC4 M05702_2.00	Homo sapiens	NKTTCCATGGAAMV	BKTTCCATGGAAMN	SELEX Yin et al.(2017) NFATC4_eDBD_HT-SELEX_2	0.804	0.804
NFATC4 M09345_2.00	Homo sapiens	HNDBTTTCCN	NGGAAAVHND	Misc Kulakovskiy et al.(2013) NFAC4_HUMAN.H11MO.0.C	0.804	0.804
Nfatc4 M09354_2.00	Mus musculus	HNDBTTTCCN	NGGAAAVHND	Misc Kulakovskiy et al.(2013) NFAC4_MOUSE.H11MO.0.C	0.804	0.804
NFATC4 M11219_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT3_Q3_01	0.804	0.804
NFATC4 M11220_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NFAT3_Q3	0.804	0.804
NFATC4 M05703_2.00	Homo sapiens	DNTTTCCRYN	NRYGGAAANH	SELEX Yin et al.(2017) NFATC4_eDBD_Methyl-HT-SELEX_1	0.804	0.804
NFATC4 M05704_2.00	Homo sapiens	NKTTCCRYGGAAMN	NKTTCCRYGGAAMN	SELEX Yin et al.(2017) NFATC4_eDBD_Methyl-HT-SELEX_2	0.804	0.804
ENSTNIG00000018271 M02445_2.00	Tetraodon nigroviridis	DNDTTCCRNN	NNYGGAAHNH	PBM Weirauch et al.(2014) pTH9005	0.776	0.776
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSPSIP00000013265	Rel	418	578	LRIEEQPKSHHRAHYETEGSRGAVKASAGGHPVVQLHGYLESEPLTLQLFIGTADDRLLRPHAFYQVHRITGKTVSTTSHETILSNTKVLEIPLLPENKMRAIIDCAGILKLRNSDIELRKGETDIGRKNTRVRLVFRVHIPQPNGRTLSLQVASNPIECS

Links
Other Rel family TFs
Other *Pelodiscus sinensis* TFs

242 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
e_gw.4.260.1_CONSTRUCT	PBM CONSTRUCTS	e_gw.4.260.1_CONSTRUCT	D	0.000
CapteG220448	Capitella teleta	CapteG220448	I	0.000
ENSPMAG00000009067	Petromyzon marinus	ENSPMAG00000009067	I	0.000
NEMVEDRAFT_v1g81183	Nematostella vectensis	NEMVEDRAFT_v1g81183	I	0.000
SINV22144	Solenopsis invicta	SINV22144	I	0.000
XP_002159148.1	Hydra magnipapillata	XP_002159148.1	I	0.000
HelroG62031	Helobdella robusta	HelroG62031	N	0.000
RPRC013496	Rhodnius prolixus	RPRC013496	N	0.000

ENSPSIG00000011711 (Pelodiscus sinensis) Rel

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

242 Related TFs

ENSPSIG00000011711 **(Pelodiscus sinensis)
Rel**