RFX7 (Bos taurus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSBTAG00000000565 T318144_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.793 1.000
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.793 1.000
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.793 1.000
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.793 1.000
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.710 0.620
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.710 0.620
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.710 0.620
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.710 0.620
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.710 0.620
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.710 0.620
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.710 0.620
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.710 0.620
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.710 0.620
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.710 0.620
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.710 0.620
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.710 0.620
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.710 0.620
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.710 0.620
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000000738 RFX 105 183

Links

Other RFX family TFs
Other Bos taurus TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU02307 Neurospora crassa NCU02307 D
TSTA_035500 Talaromyces stipitatus TSTA_035500 I
A1O3_04629 Capronia epimyces A1O3_04629 I
PMAA_046250 Talaromyces marneffei PMAA_046250 I
PODANS_4_2530 Podospora anserina PODANS_4_2530 I
PODANS_5_9700 Podospora anserina PODANS_5_9700 I
PV07_04845 Cladophialophora immunda PV07_04845 I
PV09_03558 Verruconis gallopava PV09_03558 I
SMAC_09353 Sordaria macrospora SMAC_09353 I
THITE_2050890 Thielavia terrestris THITE_2050890 I
PFICI_14476 Pestalotiopsis fici PFICI_14476 I
VHEMI00428 Torrubiella hemipterigena VHEMI00428 I
Z517_12550 Fonsecaea pedrosoi Z517_12550 I
estExt_Genewise1Plus.C_90712 Neurospora discreta estExt_Genewise1Plus.C_90712 I
e_gw1.8.145.1 Cryphonectria parasitica e_gw1.8.145.1 I
estExt_fgenesh1_pg.C_60724 Cryphonectria parasitica estExt_fgenesh1_pg.C_60724 I
PMAA_046250 Penicillium marneffei PMAA_046250 I
Cob_01903 Colletotrichum orbiculare Cob_01903 I
BBA_08203 Beauveria bassiana BBA_08203 I
BBA_09836 Beauveria bassiana BBA_09836 I
BGHDH14_bgh01891 Blumeria graminis BGHDH14_bgh01891 I
ACLA_003790 Aspergillus clavatus CADACLAG00000098 I
CCM_00925 Cordyceps militaris CCM_00925 I
CHGG_08641 Chaetomium globosum CHGG_08641 I
CHGG_09596 Chaetomium globosum CHGG_09596 I
NEUTE1DRAFT_124026 Neurospora tetrasperma NEUTE1DRAFT_124026 I
CTHT_0045110 Chaetomium thermophilum CTHT_0045110 I
DRE_04134 Drechslerella stenobrocha DRE_04134 I
GGTG_06963 Gaeumannomyces graminis GGTG_06963 I
H072_165 Dactylellina haptotyla H072_165 I
MYCTH_2307450 Myceliophthora thermophila MYCTH_2307450 I
MYCTH_2308823 Myceliophthora thermophila MYCTH_2308823 I
VHEMI03113 Torrubiella hemipterigena VHEMI03113 N
GSTUM_00003233001 Tuber melanosporum GSTUM_00003233001 N