ENSCING00000022532 (Ciona intestinalis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSCING00000022532 T318164_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.676 0.506
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.676 0.494
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.676 0.494
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.676 0.494
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.676 0.494
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.676 0.494
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.671 0.430
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.671 0.430
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.671 0.430
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.671 0.430
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.671 0.430
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.668 0.430
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.666 0.418
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.665 0.418
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.665 0.430
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.664 0.430
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.664 0.430
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.664 0.430
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.664 0.430
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.664 0.430
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.664 0.430
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.664 0.430
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.664 0.430
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.664 0.430
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.664 0.430
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.664 0.430
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.664 0.430
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.664 0.443
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.662 0.430
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.662 0.430
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.662 0.430
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.660 0.418
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.660 0.418
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.658 0.456
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.658 0.456
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.658 0.456
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.658 0.456
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.658 0.456
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.655 0.418
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.655 0.418
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.655 0.418
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.655 0.418
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.655 0.418
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.655 0.418
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.655 0.418
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.655 0.418
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.655 0.418
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.654 0.405
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.654 0.405
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.654 0.405
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.654 0.405
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.653 0.405
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.653 0.405
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.653 0.405
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.653 0.405
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.653 0.405
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.653 0.405
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000031013 RFX 72 150

Links

Other RFX family TFs
Other Ciona intestinalis TFs

560 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ada-3 Neurospora crassa NCU02896 D
CIMG_04610 Coccidioides immitis CIMG_04610 I
MCYG_05794 Microsporum canis MCYG_05794 I
SNOG_00466 Stagonospora nodorum SNOG_00466 I
VDBG_09581 Verticillium albo atrum VDBG_09581 I
A1O1_06649 Capronia coronata A1O1_06649 I
A1O3_10484 Capronia epimyces A1O3_10484 I
A1O5_10159 Cladophialophora psammophila A1O5_10159 I
A1O7_01941 Cladophialophora yegresii A1O7_01941 I
A1O9_06866 Exophiala aquamarina A1O9_06866 I
ACRE_020490 Acremonium chrysogenum ACRE_020490 I
ACRE_030130 Acremonium chrysogenum ACRE_030130 I
ARB_01292 Arthroderma benhamiae ARB_01292 I
AUEXF2481DRAFT_27177 Aureobasidium subglaciale AUEXF2481DRAFT_27177 I
BAUCODRAFT_63686 Baudoinia compniacensis BAUCODRAFT_63686 I
BBA_01669 Beauveria bassiana BBA_01669 I
Bcin05g02960 Botrytis cinerea Bcin05g02960 I
Bcin16g00320 Botrytis cinerea Bcin16g00320 I
ACLA_030770 Aspergillus clavatus CADACLAG00002327 I
AFUA_1G03800 Aspergillus fumigatus CADAFUAG00009294 I
CADANGAG00014030 Aspergillus niger CADANGAG00014030 I
ANIA_10504 Aspergillus nidulans CADANIAG00004652 I
ATEG_03831 Aspergillus terreus CADATEAG00008906 I
NFIA_020870 Neosartorya fischeri CADNFIAG00001734 I
CCM_09011 Cordyceps militaris CCM_09011 I
CFIO01_06708 Colletotrichum fioriniae CFIO01_06708 I
CH063_12126 Colletotrichum higginsianum CH063_12126 I
CHGG_02020 Chaetomium globosum CHGG_02020 I
CMQ_5979 Grosmannia clavigera CMQ_5979 I
Cob_07183 Colletotrichum orbiculare Cob_07183 I
COCCADRAFT_98777 Bipolaris zeicola COCCADRAFT_98777 I
COCMIDRAFT_5378 Bipolaris oryzae COCMIDRAFT_5378 I
COCSADRAFT_142075 Bipolaris sorokiniana COCSADRAFT_142075 I
COCVIDRAFT_97148 Bipolaris victoriae COCVIDRAFT_97148 I
CPC735_071910 Coccidioides posadasii CPC735_071910 I
CPUR_05074 Claviceps purpurea CPUR_05074 I
CSUB01_10649 Colletotrichum sublineola CSUB01_10649 I
DOTSEDRAFT_127076 Dothistroma septosporum DOTSEDRAFT_127076 I
F503_07593 Ophiostoma piceae uamh F503_07593 I
F503_08863 Ophiostoma piceae uamh F503_08863 I
FFUJ_00433 Fusarium fujikuroi FFUJ_00433 I
FFUJ_04592 Fusarium fujikuroi FFUJ_04592 I
FGRRES_00800 Fusarium graminearum FGRRES_00800 I
FGRRES_16250 Fusarium graminearum FGRRES_16250 I
FGRRES_17664 Fusarium graminearum FGRRES_17664 I
FOXG_01137 Fusarium oxysporum FOXG_01137 I
FPSE_09263 Fusarium pseudograminearum FPSE_09263 I
FPSE_12020 Fusarium pseudograminearum FPSE_12020 I
FPSE_12440 Fusarium pseudograminearum FPSE_12440 I
FVEG_00379 Fusarium verticillioides FVEG_00379 I
G647_09757 Cladophialophora carrionii G647_09757 I
GGTG_03334 Gaeumannomyces graminis GGTG_03334 I
GLRG_00909 Colletotrichum graminicola GLRG_00909 I
H101_06954 Trichophyton interdigitale H101_06954 I
H105_02238 Trichophyton soudanense H105_02238 I
HMPREF1120_04361 Exophiala dermatitidis HMPREF1120_04361 I
HMPREF1541_07144 Cyphellophora europaea HMPREF1541_07144 I
HMPREF1624_06736 Sporothrix schenckii HMPREF1624_06736 I
HMPREF1624_08785 Sporothrix schenckii HMPREF1624_08785 I
LEMA_P067510.1 Leptosphaeria maculans LEMA_P067510.1 I
M437DRAFT_65869 Aureobasidium melanogenum M437DRAFT_65869 I
M438DRAFT_32848 Aureobasidium pullulans M438DRAFT_32848 I
MAC_05495 Metarhizium acridum MAC_05495 I
MAJ_05922 Metarhizium majus MAJ_05922 I
MAM_07411 Metarhizium album MAM_07411 I
MANI_000308 Metarhizium anisopliae MANI_000308 I
MAPG_01446 Magnaporthe poae MAPG_01446 I
MBR_00159 Metarhizium brunneum MBR_00159 I
MCYG_05794 Arthroderma otae MCYG_05794 I
MGU_09666 Metarhizium guizhouense MGU_09666 I
MGYG_02900 Microsporum gypseum MGYG_02900 I
MPH_06231 Macrophomina phaseolina MPH_06231 I
MPH_09781 Macrophomina phaseolina MPH_09781 I
MYCFIDRAFT_36148 Pseudocercospora fijiensis MYCFIDRAFT_36148 I
Mycgr3G33662 Zymoseptoria tritici Mycgr3G33662 I
MYCTH_2307957 Myceliophthora thermophila MYCTH_2307957 I
NechaG11213 Fusarium solani NechaG11213 I
NechaG65901 Fusarium solani NechaG65901 I
NechaG88015 Fusarium solani NechaG88015 I
NechaG91416 Fusarium solani NechaG91416 I
NEUTE1DRAFT_92483 Neurospora tetrasperma NEUTE1DRAFT_92483 I
PCH_Pc16g08180 Penicillium rubens PCH_Pc16g08180 I
PEX1_002120 Penicillium expansum PEX1_002120 I
PFICI_03077 Pestalotiopsis fici PFICI_03077 I
PITC_030780 Penicillium italicum PITC_030780 I
PMAA_055120 Talaromyces marneffei PMAA_055120 I
PTRG_10316 Pyrenophora triticirepentis PTRG_10316 I
PTT_13784 Pyrenophora teres PTT_13784 I
PV04_02129 Capronia semiimmersa PV04_02129 I
PV05_07659 Exophiala xenobiotica PV05_07659 I
PV05_10700 Exophiala xenobiotica PV05_10700 I
PV06_07997 Exophiala oligosperma PV06_07997 I
PV07_02419 Cladophialophora immunda PV07_02419 I
PV09_00486 Verruconis gallopava PV09_00486 I
PV11_03531 Exophiala sideris PV11_03531 I
S40285_01095 Stachybotrys chlorohalonata S40285_01095 I
S40288_07746 Stachybotrys chartarum S40288_07746 I
SAPIO_CDS1279 Scedosporium apiospermum SAPIO_CDS1279 I
SBOR_5952 Sclerotinia borealis SBOR_5952 I
SEPMUDRAFT_148059 Sphaerulina musiva SEPMUDRAFT_148059 I
SETTUDRAFT_19016 Setosphaeria turcica SETTUDRAFT_19016 I
SMAC_00550 Sordaria macrospora SMAC_00550 I
SNOG_00466 Phaeosphaeria nodorum SNOG_00466 I
SPBR_02264 Sporothrix brasiliensis SPBR_02264 I
SPBR_06491 Sporothrix brasiliensis SPBR_06491 I
SS1G_02138 Sclerotinia sclerotiorum SS1G_02138 I
TEQG_00822 Trichophyton equinum TEQG_00822 I
THITE_123221 Thielavia terrestris THITE_123221 I
TRIATDRAFT_172200 Trichoderma atroviride TRIATDRAFT_172200 I
TRIREDRAFT_62297 Trichoderma reesei TRIREDRAFT_62297 I
TRIVIDRAFT_113147 Trichoderma virens TRIVIDRAFT_113147 I
TRV_01165 Trichophyton verrucosum TRV_01165 I
TSTA_017770 Talaromyces stipitatus TSTA_017770 I
U727_00434000191 Penicillium solitum U727_00434000191 I
UCREL1_10592 Eutypa lata UCREL1_10592 I
UCREL1_7993 Eutypa lata UCREL1_7993 I
UCRNP2_6697 Neofusicoccum parvum UCRNP2_6697 I
UCRPA7_8612 Togninia minima UCRPA7_8612 I
UREG_01815 Uncinocarpus reesii UREG_01815 I
UV8b_5957 Ustilaginoidea virens UV8b_5957 I
VDAG_04814 Verticillium dahliae VDAG_04814 I
VDAG_06235 Verticillium dahliae VDAG_06235 I
VDBG_09581 Verticillium alfalfae VDBG_09581 I
VHEMI02844 Torrubiella hemipterigena VHEMI02844 I
VHEMI05094 Torrubiella hemipterigena VHEMI05094 I
X797_002513 Metarhizium robertsii X797_002513 I
Z517_00016 Fonsecaea pedrosoi Z517_00016 I
Z518_05417 Rhinocladiella mackenziei Z518_05417 I
Z519_12694 Cladophialophora bantiana Z519_12694 I
e_gw1.1.2059.1 Mycosphaerella graminicola e_gw1.1.2059.1 I
e_gw1.9.518.1 Mycosphaerella fijiensis e_gw1.9.518.1 I
estExt_Genewise1Plus.C_270154 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_270154 I
estExt_Genewise1Plus.C_40406 Neurospora discreta estExt_Genewise1Plus.C_40406 I
estExt_Genewise1Plus.C_sca_1_chr1_3_01292 Nectria haematococca estExt_Genewise1Plus.C_sca_1_chr1_3_01292 I
fgenesh1_pg.sca_76_chr13_2_0000013 Nectria haematococca fgenesh1_pg.sca_76_chr13_2_0000013 I
fgenesh1_pm.sca_26_chr2_2_0000019 Nectria haematococca fgenesh1_pm.sca_26_chr2_2_0000019 I
gw1.18.787.1 Nectria haematococca gw1.18.787.1 I
AB00861.1 Alternaria brassicicola AB00861.1 I
estExt_Genewise1Plus.C_41920 Cryphonectria parasitica estExt_Genewise1Plus.C_41920 I
fgenesh1_pm.00129_#_214 Aspergillus carbonarius fgenesh1_pm.00129_#_214 I
Pc16g08180 Penicillium chrysogenum Pc16g08180 I
PMAA_055120 Penicillium marneffei PMAA_055120 I