RFX1 (Microcebus murinus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMICG00000012036 T318326_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.781 1.000
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.781 1.000
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.781 1.000
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.781 1.000
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.781 1.000
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.781 1.000
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.781 1.000
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.781 1.000
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.781 1.000
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.781 1.000
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.781 1.000
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.775 0.861
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.775 0.886
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.775 0.886
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.775 0.886
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.773 0.848
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.772 0.886
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.772 0.886
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.771 0.835
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.770 0.797
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.762 0.810
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.762 0.810
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.762 0.810
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.762 0.810
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.762 0.810
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.762 0.835
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.762 0.835
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.762 0.835
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.762 0.835
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.762 0.835
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.762 0.835
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.762 0.835
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.762 0.835
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.762 0.835
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.761 0.848
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.761 0.848
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.761 0.848
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.761 0.848
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.759 0.835
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.759 0.835
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.759 0.835
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.759 0.835
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.759 0.835
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.759 0.835
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.757 0.848
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.743 0.709
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.712 0.646
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.712 0.646
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.712 0.646
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.712 0.646
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.712 0.646
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.712 0.646
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.691 0.620
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.652 0.418
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.652 0.418
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.652 0.418
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.652 0.418
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.652 0.418
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000010956 RFX 425 503

Links

Other RFX family TFs
Other Microcebus murinus TFs

729 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU06503 Neurospora crassa NCU06503 D
CIMG_09513 Coccidioides immitis CIMG_09513 I
A1O1_09148 Capronia coronata A1O1_09148 I
A1O3_04858 Capronia epimyces A1O3_04858 I
A1O5_10914 Cladophialophora psammophila A1O5_10914 I
A1O7_09058 Cladophialophora yegresii A1O7_09058 I
A1O9_08540 Exophiala aquamarina A1O9_08540 I
ACRE_050430 Acremonium chrysogenum ACRE_050430 I
AOL_s00004g467 Arthrobotrys oligospora AOL_s00004g467 I
AUEXF2481DRAFT_65039 Aureobasidium subglaciale AUEXF2481DRAFT_65039 I
BAUCODRAFT_67300 Baudoinia compniacensis BAUCODRAFT_67300 I
BBA_06378 Beauveria bassiana BBA_06378 I
Bcin08g04290 Botrytis cinerea Bcin08g04290 I
BGHDH14_bgh03672 Blumeria graminis BGHDH14_bgh03672 I
ACLA_075180 Aspergillus clavatus CADACLAG00007213 I
AFUA_2G16230 Aspergillus fumigatus CADAFUAG00003956 I
ATEG_02323 Aspergillus terreus CADATEAG00000176 I
NFIA_091480 Neosartorya fischeri CADNFIAG00006628 I
CCM_05770 Cordyceps militaris CCM_05770 I
CFIO01_12195 Colletotrichum fioriniae CFIO01_12195 I
CH063_10005 Colletotrichum higginsianum CH063_10005 I
CHGG_03330 Chaetomium globosum CHGG_03330 I
CMQ_4569 Grosmannia clavigera CMQ_4569 I
COCC4DRAFT_73623 Bipolaris maydis COCC4DRAFT_73623 I
COCCADRAFT_3280 Bipolaris zeicola COCCADRAFT_3280 I
COCMIDRAFT_83159 Bipolaris oryzae COCMIDRAFT_83159 I
COCSADRAFT_317847 Bipolaris sorokiniana COCSADRAFT_317847 I
COCVIDRAFT_108446 Bipolaris victoriae COCVIDRAFT_108446 I
CPC735_018720 Coccidioides posadasii CPC735_018720 I
CPUR_06134 Claviceps purpurea CPUR_06134 I
CTHT_0023000 Chaetomium thermophilum CTHT_0023000 I
DOTSEDRAFT_69945 Dothistroma septosporum DOTSEDRAFT_69945 I
EPUS_05737 Endocarpon pusillum EPUS_05737 I
EURHEDRAFT_452938 Aspergillus ruber EURHEDRAFT_452938 I
EV44_g1012 Erysiphe necator EV44_g1012 I
F503_02900 Ophiostoma piceae uamh F503_02900 I
FFUJ_08525 Fusarium fujikuroi FFUJ_08525 I
FGRRES_05399 Fusarium graminearum FGRRES_05399 I
FOXG_09505 Fusarium oxysporum FOXG_09505 I
FPSE_09315 Fusarium pseudograminearum FPSE_09315 I
G647_08016 Cladophialophora carrionii G647_08016 I
GGTG_12899 Gaeumannomyces graminis GGTG_12899 I
GLRG_08419 Colletotrichum graminicola GLRG_08419 I
GMDG_04891 Pseudogymnoascus destructans GMDG_04891 I
GSTUM_00001294001 Tuber melanosporum GSTUM_00001294001 I
H072_7005 Dactylellina haptotyla H072_7005 I
HMPREF1120_01035 Exophiala dermatitidis HMPREF1120_01035 I
HMPREF1541_03882 Cyphellophora europaea HMPREF1541_03882 I
HMPREF1624_05990 Sporothrix schenckii HMPREF1624_05990 I
LEMA_P107430.1 Leptosphaeria maculans LEMA_P107430.1 I
M437DRAFT_51622 Aureobasidium melanogenum M437DRAFT_51622 I
M438DRAFT_264300 Aureobasidium pullulans M438DRAFT_264300 I
MAPG_00573 Magnaporthe poae MAPG_00573 I
MBM_02119 Marssonina brunnea MBM_02119 I
MGG_00373 Magnaporthe oryzae MGG_00373 I
MPH_05791 Macrophomina phaseolina MPH_05791 I
MYCFIDRAFT_202252 Pseudocercospora fijiensis MYCFIDRAFT_202252 I
Mycgr3G48508 Zymoseptoria tritici Mycgr3G48508 I
MYCTH_2305142 Myceliophthora thermophila MYCTH_2305142 I
NechaG62953 Fusarium solani NechaG62953 I
OCS_04386 Ophiocordyceps sinensis OCS_04386 I
OIDMADRAFT_116081 Oidiodendron maius OIDMADRAFT_116081 I
PCH_Pc21g01800 Penicillium rubens PCH_Pc21g01800 I
PDE_07758 Penicillium oxalicum PDE_07758 I
PEX1_034950 Penicillium expansum PEX1_034950 I
PFICI_05888 Pestalotiopsis fici PFICI_05888 I
PITC_083090 Penicillium italicum PITC_083090 I
PMAA_038080 Talaromyces marneffei PMAA_038080 I
PODANS_7_7860 Podospora anserina PODANS_7_7860 I
PTRG_05513 Pyrenophora triticirepentis PTRG_05513 I
PTT_11782 Pyrenophora teres PTT_11782 I
PV04_09644 Capronia semiimmersa PV04_09644 I
PV05_00271 Exophiala xenobiotica PV05_00271 I
PV06_07387 Exophiala oligosperma PV06_07387 I
PV07_00073 Cladophialophora immunda PV07_00073 I
PV08_01606 Exophiala spinifera PV08_01606 I
PV09_05002 Verruconis gallopava PV09_05002 I
PV10_05179 Exophiala mesophila PV10_05179 I
PV11_03237 Exophiala sideris PV11_03237 I
PVAR5_0273 Byssochlamys spectabilis PVAR5_0273 I
S40285_00403 Stachybotrys chlorohalonata S40285_00403 I
S40288_00174 Stachybotrys chartarum S40288_00174 I
SAPIO_CDS5390 Scedosporium apiospermum SAPIO_CDS5390 I
SBOR_3205 Sclerotinia borealis SBOR_3205 I
SEPMUDRAFT_147252 Sphaerulina musiva SEPMUDRAFT_147252 I
SETTUDRAFT_19859 Setosphaeria turcica SETTUDRAFT_19859 I
SMAC_05337 Sordaria macrospora SMAC_05337 I
SPBR_00205 Sporothrix brasiliensis SPBR_00205 I
SS1G_03115 Sclerotinia sclerotiorum SS1G_03115 I
THITE_2118864 Thielavia terrestris THITE_2118864 I
TRIATDRAFT_232454 Trichoderma atroviride TRIATDRAFT_232454 I
TRIREDRAFT_112342 Trichoderma reesei TRIREDRAFT_112342 I
TRIVIDRAFT_51124 Trichoderma virens TRIVIDRAFT_51124 I
TSTA_053940 Talaromyces stipitatus TSTA_053940 I
U727_00430142121 Penicillium solitum U727_00430142121 I
UCRNP2_4875 Neofusicoccum parvum UCRNP2_4875 I
VHEMI01492 Torrubiella hemipterigena VHEMI01492 I
W97_08751 Coniosporium apollinis W97_08751 I
Z517_01898 Fonsecaea pedrosoi Z517_01898 I
Z518_03210 Rhinocladiella mackenziei Z518_03210 I
Z519_11455 Cladophialophora bantiana Z519_11455 I
e_gw1.10.63.1 Mycosphaerella graminicola e_gw1.10.63.1 I
estExt_fgenesh1_pm.C_180056 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_180056 I
estExt_fgenesh2_pg.C_50693 Neurospora discreta estExt_fgenesh2_pg.C_50693 I
estExt_Genewise1.C_160187 Mycosphaerella fijiensis estExt_Genewise1.C_160187 I
estExt_Genewise1.C_sca_10_chr8_2_00756 Nectria haematococca estExt_Genewise1.C_sca_10_chr8_2_00756 I
AB04255.1 Alternaria brassicicola AB04255.1 I
Pc21g01800 Penicillium chrysogenum Pc21g01800 I
PMAA_038080 Penicillium marneffei PMAA_038080 I