ENSNLEG00000010170 (Nomascus leucogenys)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSNLEG00000010170 T318372_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.792 1.000
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.792 1.000
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.792 1.000
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.792 1.000
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.792 1.000
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.792 1.000
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.792 1.000
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.792 1.000
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.792 1.000
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.792 1.000
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.792 1.000
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.792 1.000
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.792 1.000
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.792 1.000
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.792 1.000
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSNLEP00000012407 RFX 89 168

Links

Other RFX family TFs
Other Nomascus leucogenys TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Zfp414 Mus musculus ENSMUSG00000073423 N
Myotis_brandtii_ZNF414_10012537 Myotis brandtii Myotis_brandtii_ZNF414_10012537 N
ENSP00000377504 Macaca fascicularis ENSP00000377504 N
ENSBTAP00000010078-D1 Bos grunniens ENSBTAP00000010078-D1 N
ZNF414 Tupaia belangeri ENSTBEG00000004008 N
ENSSTOG00000028879 Ictidomys tridecemlineatus ENSSTOG00000028879 N
Zfp414 Rattus norvegicus ENSRNOG00000008378 N
ZNF414 Pteropus vampyrus ENSPVAG00000009654 N
ZNF414 Pan troglodytes ENSPTRG00000010427 N
ENSPPYG00000009508 Pongo abelii ENSPPYG00000009508 N
ENSPANG00000000284 Papio anubis ENSPANG00000000284 N
ZNF414 Otolemur garnettii ENSOGAG00000003243 N
ZNF414 Oryctolagus cuniculus ENSOCUG00000027412 N
ENSOARG00000004095 Ovis aries ENSOARG00000004095 N
ENSNLEG00000001897 Nomascus leucogenys ENSNLEG00000001897 N
ENSAMEG00000005011 Ailuropoda melanoleuca ENSAMEG00000005011 N
ENSMPUG00000007231 Mustela putorius furo ENSMPUG00000007231 N
ZNF414 Macaca mulatta ENSMMUG00000019918 N
ZNF414 Myotis lucifugus ENSMLUG00000006742 N
ZNF414 Loxodonta africana ENSLAFG00000021907 N
ZNF414 Gorilla gorilla ENSGGOG00000003514 N
ZNF414 Homo sapiens ENSG00000133250 N
ZNF414 Felis catus ENSFCAG00000015220 N
ZNF414 Echinops telfairi ENSETEG00000019716 N
ZNF414 Equus caballus ENSECAG00000023401 N
ZNF414 Dasypus novemcinctus ENSDNOG00000025224 N
ENSCSAG00000007968 Chlorocebus sabaeus ENSCSAG00000007968 N
ENSCPOG00000027253 Cavia porcellus ENSCPOG00000027253 N
ZNF414 Canis familiaris ENSCAFG00000018529 N
ZNF414 Bos taurus ENSBTAG00000007660 N