RFX7 (Ochotona princeps)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSOPRG00000003155 T318415_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.687 0.966
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.687 0.966
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.687 0.966
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.687 0.966
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.661 0.655
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.661 0.655
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.661 0.655
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.661 0.655
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.661 0.655
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.661 0.655
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.661 0.655
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.661 0.655
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.661 0.655
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.661 0.655
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.661 0.655
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.661 0.655
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.661 0.655
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.661 0.655
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.661 0.655
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000002907 RFX 8 45

Links

Other RFX family TFs
Other Ochotona princeps TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TEQG_04142 Trichophyton equinum TEQG_04142 N
PABG_03595 Paracoccidioides brasiliensis PABG_03595 N
PCH_Pc14g00630 Penicillium rubens PCH_Pc14g00630 N
PDE_01436 Penicillium oxalicum PDE_01436 N
PDIP_67820 Penicillium digitatum PDIP_67820 N
PEX1_026460 Penicillium expansum PEX1_026460 N
PITC_090510 Penicillium italicum PITC_090510 N
PMAA_005670 Talaromyces marneffei PMAA_005670 N
PVAR5_4424 Byssochlamys spectabilis PVAR5_4424 N
PAAG_01538 Paracoccidioides sp lutzii PAAG_01538 N
TESG_01805 Trichophyton tonsurans TESG_01805 N
TRV_08126 Trichophyton verrucosum TRV_08126 N
TSTA_104270 Talaromyces stipitatus TSTA_104270 N
U727_00433631381 Penicillium solitum U727_00433631381 N
UREG_02530 Uncinocarpus reesii UREG_02530 N
fgenesh1_pm.00771_#_439 Aspergillus carbonarius fgenesh1_pm.00771_#_439 N
Pc14g00630 Penicillium chrysogenum Pc14g00630 N
PMAA_005670 Penicillium marneffei PMAA_005670 N
ATEG_02862 Aspergillus terreus CADATEAG00010270 N
MCYG_02773 Microsporum canis MCYG_02773 N
ARB_06056 Arthroderma benhamiae ARB_06056 N
BDDG_07814 Blastomyces dermatitidis BDDG_07814 N
ACLA_060680 Aspergillus clavatus CADACLAG00006069 N
CADAFLAG00008613 Aspergillus flavus CADAFLAG00008613 N
CADANGAG00000016 Aspergillus niger CADANGAG00000016 N
ANIA_09397 Aspergillus nidulans CADANIAG00001184 N
CADAORAG00011876 Aspergillus oryzae CADAORAG00011876 N
CIMG_08455 Coccidioides immitis CIMG_08455 N
NFIA_006380 Neosartorya fischeri CADNFIAG00000086 N
CPC735_061230 Coccidioides posadasii CPC735_061230 N
EURHEDRAFT_524848 Aspergillus ruber EURHEDRAFT_524848 N
H102_02756 Trichophyton rubrum H102_02756 N
H105_02773 Trichophyton soudanense H105_02773 N
HCBG_08372 Histoplasma capsulatum HCBG_08372 N
MCYG_02773 Arthroderma otae MCYG_02773 N