GG10435 (Drosophila erecta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 FBgn0102744 T318588_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.685 0.519
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.685 0.519
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.685 0.519
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.685 0.519
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.672 0.468
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.672 0.468
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.672 0.468
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.672 0.468
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.672 0.468
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.672 0.468
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.672 0.468
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.672 0.468
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.672 0.468
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.672 0.468
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.672 0.468
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.672 0.468
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.672 0.468
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.672 0.468
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.672 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0128981 RFX 305 383

Links

Other RFX family TFs
Other Drosophila erecta TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMAM002157 Anopheles maculatus AMAM002157 N
AALB002019 Anopheles albimanus AALB002019 N
AARA005043 Anopheles arabiensis AARA005043 N
ACHR001889 Anopheles christyi ACHR001889 N
ACOM030546 Anopheles coluzzii ACOM030546 N
ACUA002940 Anopheles culicifacies ACUA002940 N
ADIR011245 Anopheles dirus ADIR011245 N
AEPI008198 Anopheles epiroticus AEPI008198 N
AFUN015812 Anopheles funestus AFUN015812 N
AFUN015813 Anopheles funestus AFUN015813 N
LCUP011585 Lucilia cuprina LCUP011585 N
AMEC008629 Anopheles melas AMEC008629 N
AMEM005132 Anopheles merus AMEM005132 N
AMIN006189 Anopheles minimus AMIN006189 N
AQUA001070 Anopheles quadriannulatus AQUA001070 N
ASIS015471 Anopheles sinensis ASIS015471 N
ASTEI01836 Anopheles stephensi ASTEI01836 N
MDOA011496 Musca domestica MDOA011496 N
PPAI007775 Phlebotomus papatasi PPAI007775 N
GI17918 Drosophila mojavensis FBgn0140659 N
AAEL002079 Aedes aegypti AAEL002079 N
ADAC008437 Anopheles darlingi ADAC008437 N
AGAP008084 Anopheles gambiae AGAP008084 N
CPIJ001883 Culex quinquefasciatus CPIJ001883 N
Trf Drosophila melanogaster FBgn0010287 N
GA20441 Drosophila pseudoobscura FBgn0080436 N
GF14757 Drosophila ananassae FBgn0091784 N
GG10512 Drosophila erecta FBgn0102820 N
GH11614 Drosophila grimshawi FBgn0119094 N
CpipJ_CPIJ001883 Culex pipiens CpipJ_CPIJ001883 N
GL24756 Drosophila persimilis FBgn0162344 N
GM16720 Drosophila sechellia FBgn0171633 N
GD23502 Drosophila simulans FBgn0194881 N
GJ17690 Drosophila virilis FBgn0204859 N
GK15318 Drosophila willistoni FBgn0217323 N
GE18732 Drosophila yakuba FBgn0236124 N
NV15957 Nasonia vitripennis NV15957 N
SINV12226 Solenopsis invicta SINV12226 N