PHUM236330 (Pediculus humanus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 PHUM236330 T318748_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.745 0.709
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.745 0.709
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.745 0.709
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.745 0.709
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.745 0.709
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.745 0.696
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.706 0.595
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.706 0.595
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.706 0.595
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.704 0.557
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.704 0.557
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.704 0.557
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.704 0.557
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.704 0.557
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.703 0.582
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.703 0.582
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.703 0.582
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.703 0.582
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.703 0.582
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.703 0.582
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.703 0.582
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.703 0.582
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.703 0.582
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.703 0.582
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.703 0.582
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.703 0.582
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.703 0.582
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.703 0.570
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.701 0.557
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.701 0.544
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.701 0.557
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.697 0.582
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.696 0.557
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.696 0.557
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.696 0.557
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.696 0.557
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.696 0.557
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.696 0.557
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.696 0.557
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.696 0.557
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.696 0.557
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.694 0.557
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.693 0.544
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.693 0.544
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.693 0.544
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.693 0.544
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.693 0.544
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.693 0.544
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.693 0.544
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.693 0.544
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.693 0.544
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.693 0.544
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.692 0.557
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.661 0.468
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.661 0.468
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.661 0.468
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.661 0.468
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.661 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PHUM236330-PA RFX 30 108

Links

Other RFX family TFs
Other Pediculus humanus TFs

753 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF7 Homo sapiens ENSG00000147789 D
ZNF7 Oryctolagus cuniculus ENSOCUG00000022081 I
Myotis_brandtii_ZNF7_10006486 Myotis brandtii Myotis_brandtii_ZNF7_10006486 I
ENSSTOG00000021142 Ictidomys tridecemlineatus ENSSTOG00000021142 I
ZNF7 Sorex araneus ENSSARG00000013435 I
LOC108348145 Rattus norvegicus ENSRNOG00000050695 I
Znf7 Rattus norvegicus ENSRNOG00000050497 I
ZNF7 Pteropus vampyrus ENSPVAG00000004291 I
ZNF7 Pan troglodytes ENSPTRG00000020717 I
ENSPPYG00000018994 Pongo abelii ENSPPYG00000018994 I
ENSMPUG00000006051 Mustela putorius furo ENSMPUG00000006051 I
ZNF7 Loxodonta africana ENSLAFG00000010535 I
ZNF7 Gorilla gorilla ENSGGOG00000008185 I
Zfp7 Dipodomys ordii ENSDORG00000011889 I
ZNF7 Dasypus novemcinctus ENSDNOG00000043881 I
ZNF7 Cavia porcellus ENSCPOG00000010429 I
ZNF7 Canis familiaris ENSCAFG00000030492 I
ENSAMEG00000005420 Ailuropoda melanoleuca ENSAMEG00000005420 N
ZNF7 Felis catus ENSFCAG00000012559 N
ZNF7 Sus scrofa ENSSSCG00000005890 N