YALI0_E13596g (Yarrowia lipolytica)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 YALI0_E13596g T318856_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.708 0.570
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.708 0.570
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.708 0.570
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.708 0.570
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.708 0.570
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.667 0.456
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.667 0.443
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.667 0.443
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.667 0.443
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.667 0.443
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.667 0.443
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.667 0.443
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.664 0.468
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.664 0.468
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.664 0.468
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.664 0.468
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.664 0.481
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.664 0.481
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.663 0.468
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.663 0.468
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.663 0.468
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.663 0.468
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.663 0.468
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.663 0.468
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.663 0.468
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.663 0.468
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.662 0.430
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.662 0.430
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.662 0.430
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.662 0.430
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.662 0.430
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.662 0.430
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.662 0.430
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.662 0.430
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.662 0.430
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.662 0.430
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.662 0.430
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.662 0.468
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.662 0.468
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.662 0.468
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.662 0.468
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.662 0.468
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.662 0.468
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.662 0.468
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.662 0.468
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.662 0.468
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.662 0.468
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.662 0.468
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.662 0.468
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.661 0.456
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.661 0.456
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.661 0.456
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.661 0.456
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.661 0.456
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.661 0.430
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.660 0.443
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.658 0.481
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CAG79501 RFX 169 247

Links

Other RFX family TFs
Other Yarrowia lipolytica TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TVAG_004990 Trichomonas vaginalis TVAG_004990 N
TVAG_007880 Trichomonas vaginalis TVAG_007880 N
TVAG_016430 Trichomonas vaginalis TVAG_016430 N
TVAG_033220 Trichomonas vaginalis TVAG_033220 N
TVAG_046930 Trichomonas vaginalis TVAG_046930 N
TVAG_049560 Trichomonas vaginalis TVAG_049560 N
TVAG_050560 Trichomonas vaginalis TVAG_050560 N
TVAG_051790 Trichomonas vaginalis TVAG_051790 N
TVAG_060930 Trichomonas vaginalis TVAG_060930 N
TVAG_078370 Trichomonas vaginalis TVAG_078370 N
TVAG_078880 Trichomonas vaginalis TVAG_078880 N
TVAG_080590 Trichomonas vaginalis TVAG_080590 N
TVAG_082950 Trichomonas vaginalis TVAG_082950 N
TVAG_089200 Trichomonas vaginalis TVAG_089200 N
TVAG_089730 Trichomonas vaginalis TVAG_089730 N
TVAG_089940 Trichomonas vaginalis TVAG_089940 N
TVAG_095680 Trichomonas vaginalis TVAG_095680 N
TVAG_096030 Trichomonas vaginalis TVAG_096030 N
TVAG_101800 Trichomonas vaginalis TVAG_101800 N
TVAG_104150 Trichomonas vaginalis TVAG_104150 N
TVAG_105370 Trichomonas vaginalis TVAG_105370 N
TVAG_106130 Trichomonas vaginalis TVAG_106130 N
TVAG_108630 Trichomonas vaginalis TVAG_108630 N
TVAG_117570 Trichomonas vaginalis TVAG_117570 N
TVAG_122140 Trichomonas vaginalis TVAG_122140 N
TVAG_123620 Trichomonas vaginalis TVAG_123620 N
TVAG_134720 Trichomonas vaginalis TVAG_134720 N
TVAG_134760 Trichomonas vaginalis TVAG_134760 N
TVAG_135080 Trichomonas vaginalis TVAG_135080 N
TVAG_136980 Trichomonas vaginalis TVAG_136980 N
TVAG_137720 Trichomonas vaginalis TVAG_137720 N
TVAG_141650 Trichomonas vaginalis TVAG_141650 N
TVAG_146320 Trichomonas vaginalis TVAG_146320 N
TVAG_146560 Trichomonas vaginalis TVAG_146560 N
TVAG_148850 Trichomonas vaginalis TVAG_148850 N
TVAG_155570 Trichomonas vaginalis TVAG_155570 N
TVAG_170850 Trichomonas vaginalis TVAG_170850 N
TVAG_179560 Trichomonas vaginalis TVAG_179560 N
TVAG_180260 Trichomonas vaginalis TVAG_180260 N
TVAG_181830 Trichomonas vaginalis TVAG_181830 N
TVAG_182100 Trichomonas vaginalis TVAG_182100 N
TVAG_183570 Trichomonas vaginalis TVAG_183570 N
TVAG_184750 Trichomonas vaginalis TVAG_184750 N
TVAG_194580 Trichomonas vaginalis TVAG_194580 N
TVAG_200460 Trichomonas vaginalis TVAG_200460 N
TVAG_200800 Trichomonas vaginalis TVAG_200800 N
TVAG_201280 Trichomonas vaginalis TVAG_201280 N
TVAG_203110 Trichomonas vaginalis TVAG_203110 N
TVAG_203210 Trichomonas vaginalis TVAG_203210 N
TVAG_207110 Trichomonas vaginalis TVAG_207110 N
TVAG_209350 Trichomonas vaginalis TVAG_209350 N
TVAG_209610 Trichomonas vaginalis TVAG_209610 N
TVAG_222250 Trichomonas vaginalis TVAG_222250 N
TVAG_236450 Trichomonas vaginalis TVAG_236450 N
TVAG_245390 Trichomonas vaginalis TVAG_245390 N
TVAG_255420 Trichomonas vaginalis TVAG_255420 N
TVAG_265050 Trichomonas vaginalis TVAG_265050 N
TVAG_277290 Trichomonas vaginalis TVAG_277290 N
TVAG_283820 Trichomonas vaginalis TVAG_283820 N
TVAG_285120 Trichomonas vaginalis TVAG_285120 N
TVAG_298810 Trichomonas vaginalis TVAG_298810 N
TVAG_300430 Trichomonas vaginalis TVAG_300430 N
TVAG_309950 Trichomonas vaginalis TVAG_309950 N
TVAG_310350 Trichomonas vaginalis TVAG_310350 N
TVAG_313220 Trichomonas vaginalis TVAG_313220 N
TVAG_325350 Trichomonas vaginalis TVAG_325350 N
TVAG_325380 Trichomonas vaginalis TVAG_325380 N
TVAG_332170 Trichomonas vaginalis TVAG_332170 N
TVAG_333460 Trichomonas vaginalis TVAG_333460 N
TVAG_347010 Trichomonas vaginalis TVAG_347010 N
TVAG_354470 Trichomonas vaginalis TVAG_354470 N
TVAG_355410 Trichomonas vaginalis TVAG_355410 N
TVAG_358060 Trichomonas vaginalis TVAG_358060 N
TVAG_358480 Trichomonas vaginalis TVAG_358480 N
TVAG_359350 Trichomonas vaginalis TVAG_359350 N
TVAG_361000 Trichomonas vaginalis TVAG_361000 N
TVAG_367320 Trichomonas vaginalis TVAG_367320 N
TVAG_372860 Trichomonas vaginalis TVAG_372860 N
TVAG_376340 Trichomonas vaginalis TVAG_376340 N
TVAG_377720 Trichomonas vaginalis TVAG_377720 N
TVAG_382380 Trichomonas vaginalis TVAG_382380 N
TVAG_389450 Trichomonas vaginalis TVAG_389450 N
TVAG_392160 Trichomonas vaginalis TVAG_392160 N
TVAG_402970 Trichomonas vaginalis TVAG_402970 N
TVAG_415550 Trichomonas vaginalis TVAG_415550 N
TVAG_416360 Trichomonas vaginalis TVAG_416360 N
TVAG_420050 Trichomonas vaginalis TVAG_420050 N
TVAG_422180 Trichomonas vaginalis TVAG_422180 N
TVAG_425390 Trichomonas vaginalis TVAG_425390 N
TVAG_427790 Trichomonas vaginalis TVAG_427790 N
TVAG_429380 Trichomonas vaginalis TVAG_429380 N
TVAG_429400 Trichomonas vaginalis TVAG_429400 N
TVAG_438570 Trichomonas vaginalis TVAG_438570 N
TVAG_439260 Trichomonas vaginalis TVAG_439260 N
TVAG_444650 Trichomonas vaginalis TVAG_444650 N
TVAG_458310 Trichomonas vaginalis TVAG_458310 N
TVAG_462050 Trichomonas vaginalis TVAG_462050 N
TVAG_465630 Trichomonas vaginalis TVAG_465630 N
TVAG_467650 Trichomonas vaginalis TVAG_467650 N
TVAG_471600 Trichomonas vaginalis TVAG_471600 N
TVAG_472850 Trichomonas vaginalis TVAG_472850 N
TVAG_477630 Trichomonas vaginalis TVAG_477630 N
TVAG_477850 Trichomonas vaginalis TVAG_477850 N
TVAG_480340 Trichomonas vaginalis TVAG_480340 N
TVAG_480450 Trichomonas vaginalis TVAG_480450 N
TVAG_486270 Trichomonas vaginalis TVAG_486270 N
TVAG_489490 Trichomonas vaginalis TVAG_489490 N
TVAG_490170 Trichomonas vaginalis TVAG_490170 N
TVAG_490610 Trichomonas vaginalis TVAG_490610 N
TVAG_496850 Trichomonas vaginalis TVAG_496850 N
TVAG_500600 Trichomonas vaginalis TVAG_500600 N
TVAG_503000 Trichomonas vaginalis TVAG_503000 N
TVAG_503110 Trichomonas vaginalis TVAG_503110 N
TVAG_513790 Trichomonas vaginalis TVAG_513790 N
TVAG_516410 Trichomonas vaginalis TVAG_516410 N
TVAG_521330 Trichomonas vaginalis TVAG_521330 N
TVAG_521450 Trichomonas vaginalis TVAG_521450 N
TVAG_523960 Trichomonas vaginalis TVAG_523960 N
TVAG_526240 Trichomonas vaginalis TVAG_526240 N
TVAG_526900 Trichomonas vaginalis TVAG_526900 N
TVAG_529820 Trichomonas vaginalis TVAG_529820 N
TVAG_532060 Trichomonas vaginalis TVAG_532060 N
TVAG_537520 Trichomonas vaginalis TVAG_537520 N
TVAG_537940 Trichomonas vaginalis TVAG_537940 N
TVAG_540890 Trichomonas vaginalis TVAG_540890 N
TVAG_542120 Trichomonas vaginalis TVAG_542120 N
TVAG_543050 Trichomonas vaginalis TVAG_543050 N
TVAG_543070 Trichomonas vaginalis TVAG_543070 N
TVAG_546750 Trichomonas vaginalis TVAG_546750 N
TVAG_557100 Trichomonas vaginalis TVAG_557100 N
TVAG_557210 Trichomonas vaginalis TVAG_557210 N
TVAG_557330 Trichomonas vaginalis TVAG_557330 N
TVAG_559890 Trichomonas vaginalis TVAG_559890 N
TVAG_559950 Trichomonas vaginalis TVAG_559950 N
TVAG_566470 Trichomonas vaginalis TVAG_566470 N
TVAG_567250 Trichomonas vaginalis TVAG_567250 N
TVAG_569240 Trichomonas vaginalis TVAG_569240 N
TVAG_570260 Trichomonas vaginalis TVAG_570260 N
TVAG_571070 Trichomonas vaginalis TVAG_571070 N
TVAG_571920 Trichomonas vaginalis TVAG_571920 N
TVAG_577560 Trichomonas vaginalis TVAG_577560 N
TVAG_577640 Trichomonas vaginalis TVAG_577640 N
TVAG_579720 Trichomonas vaginalis TVAG_579720 N
TVAG_581730 Trichomonas vaginalis TVAG_581730 N
TVAG_584800 Trichomonas vaginalis TVAG_584800 N
TVAG_584810 Trichomonas vaginalis TVAG_584810 N
TVAG_585870 Trichomonas vaginalis TVAG_585870 N
TVAG_586260 Trichomonas vaginalis TVAG_586260 N
TVAG_588190 Trichomonas vaginalis TVAG_588190 N
TVAG_588410 Trichomonas vaginalis TVAG_588410 N
TVAG_590720 Trichomonas vaginalis TVAG_590720 N
TVAG_593090 Trichomonas vaginalis TVAG_593090 N
TVAG_596750 Trichomonas vaginalis TVAG_596750 N
TVAG_597140 Trichomonas vaginalis TVAG_597140 N
TVAG_598920 Trichomonas vaginalis TVAG_598920 N
TVAG_601320 Trichomonas vaginalis TVAG_601320 N
TVAG_602590 Trichomonas vaginalis TVAG_602590 N
TVAG_605230 Trichomonas vaginalis TVAG_605230 N
TVAG_606110 Trichomonas vaginalis TVAG_606110 N
TVAG_606150 Trichomonas vaginalis TVAG_606150 N