Cmyd_10014217 (Chelonia mydas)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Cmyd_10014217 T318967_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.687 0.795
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.687 0.795
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.687 0.795
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.687 0.795
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.661 0.487
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.661 0.487
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.661 0.487
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.661 0.487
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.661 0.487
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.661 0.487
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.661 0.487
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.661 0.487
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.661 0.487
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.661 0.487
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.661 0.487
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.661 0.487
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.661 0.487
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.661 0.487
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.661 0.487
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10014217 RFX 57 95

Links

Other RFX family TFs
Other Chelonia mydas TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I 0.000
GRMZM2G088443 Zea mays GRMZM2G088443 I 0.000
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I 0.000
LPERR01G03590 Leersia perrieri LPERR01G03590 I 0.000
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I 0.000
Si002655m.g Setaria italica Si002655m.g I 0.000
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N 0.000
Pavir.J32610 Panicum virgatum Pavir.J32610 N 0.000
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N 0.000
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N 0.000
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N 0.000
OS05G0163900 Oryza sativa OS05G0163900 N 0.000
Sb03g005250 Sorghum bicolor Sb03g005250 N 0.000
Sb09g004820 Sorghum bicolor Sb09g004820 N 0.000
Si012213m.g Setaria italica Si012213m.g N 0.000
Traes_3B_2DF1A6E5B Triticum aestivum Traes_3B_2DF1A6E5B N 0.000
TRAES3BF130100030CFD_g Triticum aestivum TRAES3BF130100030CFD_g N 0.000
TRIUR3_07421 Triticum urartu TRIUR3_07421 N 0.000
TRIUR3_21807 Triticum urartu TRIUR3_21807 N 0.000
BGIOSGA002833 Oryza indica BGIOSGA002833 N 0.000
OPUNC05G04080 Oryza punctata OPUNC05G04080 N 0.000
OPUNC01G03610 Oryza punctata OPUNC01G03610 N 0.000
ONIVA05G04820 Oryza nivara ONIVA05G04820 N 0.000
ONIVA01G04390 Oryza nivara ONIVA01G04390 N 0.000
OMERI05G04410 Oryza meridionalis OMERI05G04410 N 0.000
OMERI01G03850 Oryza meridionalis OMERI01G03850 N 0.000
OLONG_015419 Oryza longistaminata OLONG_015419 N 0.000
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N 0.000
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N 0.000
OBART05G04450 Oryza barthii OBART05G04450 N 0.000
OBART01G03950 Oryza barthii OBART01G03950 N 0.000
OB05G14140 Oryza brachyantha OB05G14140 N 0.000
OB01G13800 Oryza brachyantha OB01G13800 N 0.000
LPERR05G03980 Leersia perrieri LPERR05G03980 N 0.000
GRMZM2G369629 Zea mays GRMZM2G369629 N 0.000
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N 0.000