ENSP00000397644-D1 (Bos grunniens)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 ENSP00000397644-D1 T318986_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.788 0.987
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.788 0.987
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.788 0.987
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.788 0.987
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.705 0.603
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.705 0.603
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.705 0.603
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.705 0.603
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.705 0.603
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.705 0.603
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.705 0.603
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.705 0.603
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.705 0.603
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.705 0.603
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.705 0.603
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.705 0.603
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.705 0.603
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.705 0.603
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.705 0.603
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000397644-D1 RFX 105 182

Links

Other RFX family TFs
Other Bos grunniens TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_00891 Aspergillus nidulans CADANIAG00001766 D
MCYG_00396 Microsporum canis MCYG_00396 I
SNOG_06526 Stagonospora nodorum SNOG_06526 I
VDBG_01044 Verticillium albo atrum VDBG_01044 I
A1O1_04627 Capronia coronata A1O1_04627 I
A1O3_06762 Capronia epimyces A1O3_06762 I
A1O5_09172 Cladophialophora psammophila A1O5_09172 I
A1O7_07756 Cladophialophora yegresii A1O7_07756 I
A1O9_01921 Exophiala aquamarina A1O9_01921 I
ACRE_013920 Acremonium chrysogenum ACRE_013920 I
AOL_s00083g376 Arthrobotrys oligospora AOL_s00083g376 I
AOL_s00176g84 Arthrobotrys oligospora AOL_s00176g84 I
ARB_00054 Arthroderma benhamiae ARB_00054 I
AUEXF2481DRAFT_37011 Aureobasidium subglaciale AUEXF2481DRAFT_37011 I
BBA_01502 Beauveria bassiana BBA_01502 I
Bcin06g05430 Botrytis cinerea Bcin06g05430 I
BDDG_02937 Blastomyces dermatitidis BDDG_02937 I
ACLA_019870 Aspergillus clavatus CADACLAG00002121 I
CADAFLAG00001174 Aspergillus flavus CADAFLAG00001174 I
AFUA_1G15470 Aspergillus fumigatus CADAFUAG00006845 I
CADANGAG00001387 Aspergillus niger CADANGAG00001387 I
CADAORAG00003061 Aspergillus oryzae CADAORAG00003061 I
ATEG_05241 Aspergillus terreus CADATEAG00005466 I
NFIA_009930 Neosartorya fischeri CADNFIAG00000876 I
CFIO01_05405 Colletotrichum fioriniae CFIO01_05405 I
CH063_00339 Colletotrichum higginsianum CH063_00339 I
CHGG_04684 Chaetomium globosum CHGG_04684 I
CMQ_4539 Grosmannia clavigera CMQ_4539 I
Cob_10644 Colletotrichum orbiculare Cob_10644 I
COCC4DRAFT_164616 Bipolaris maydis COCC4DRAFT_164616 I
COCCADRAFT_91527 Bipolaris zeicola COCCADRAFT_91527 I
COCMIDRAFT_37182 Bipolaris oryzae COCMIDRAFT_37182 I
COCSADRAFT_33134 Bipolaris sorokiniana COCSADRAFT_33134 I
COCVIDRAFT_36967 Bipolaris victoriae COCVIDRAFT_36967 I
CSUB01_03445 Colletotrichum sublineola CSUB01_03445 I
CTHT_0033150 Chaetomium thermophilum CTHT_0033150 I
DOTSEDRAFT_168469 Dothistroma septosporum DOTSEDRAFT_168469 I
DRE_04272 Drechslerella stenobrocha DRE_04272 I
F503_04272 Ophiostoma piceae uamh F503_04272 I
FFUJ_05000 Fusarium fujikuroi FFUJ_05000 I
FGRRES_05120 Fusarium graminearum FGRRES_05120 I
FOXG_08561 Fusarium oxysporum FOXG_08561 I
FPSE_06516 Fusarium pseudograminearum FPSE_06516 I
FVEG_06107 Fusarium verticillioides FVEG_06107 I
G647_02322 Cladophialophora carrionii G647_02322 I
GGTG_08486 Gaeumannomyces graminis GGTG_08486 I
GLRG_02905 Colletotrichum graminicola GLRG_02905 I
GSTUM_00005791001 Tuber melanosporum GSTUM_00005791001 I
GSTUM_00006643001 Tuber melanosporum GSTUM_00006643001 I
H072_536 Dactylellina haptotyla H072_536 I
H072_8968 Dactylellina haptotyla H072_8968 I
H101_05531 Trichophyton interdigitale H101_05531 I
H102_00998 Trichophyton rubrum H102_00998 I
H105_01004 Trichophyton soudanense H105_01004 I
HMPREF1120_01697 Exophiala dermatitidis HMPREF1120_01697 I
HMPREF1541_02980 Cyphellophora europaea HMPREF1541_02980 I
HMPREF1624_05877 Sporothrix schenckii HMPREF1624_05877 I
LEMA_P071070.1 Leptosphaeria maculans LEMA_P071070.1 I
M437DRAFT_57418 Aureobasidium melanogenum M437DRAFT_57418 I
M438DRAFT_363096 Aureobasidium pullulans M438DRAFT_363096 I
MAC_00713 Metarhizium acridum MAC_00713 I
MAJ_01729 Metarhizium majus MAJ_01729 I
MAM_03896 Metarhizium album MAM_03896 I
MANI_020514 Metarhizium anisopliae MANI_020514 I
MBR_00363 Metarhizium brunneum MBR_00363 I
MCYG_00396 Arthroderma otae MCYG_00396 I
MGU_01179 Metarhizium guizhouense MGU_01179 I
MGYG_01563 Microsporum gypseum MGYG_01563 I
MPH_07179 Macrophomina phaseolina MPH_07179 I
MYCFIDRAFT_105751 Pseudocercospora fijiensis MYCFIDRAFT_105751 I
Mycgr3G31719 Zymoseptoria tritici Mycgr3G31719 I
MYCTH_73877 Myceliophthora thermophila MYCTH_73877 I
NechaG34259 Fusarium solani NechaG34259 I
OIDMADRAFT_175432 Oidiodendron maius OIDMADRAFT_175432 I
PAAG_02168 Paracoccidioides sp lutzii PAAG_02168 I
PABG_02404 Paracoccidioides brasiliensis PABG_02404 I
PCH_Pc06g01740 Penicillium rubens PCH_Pc06g01740 I
PDE_00471 Penicillium oxalicum PDE_00471 I
PDIP_65300 Penicillium digitatum PDIP_65300 I
PEX1_016570 Penicillium expansum PEX1_016570 I
PFICI_04606 Pestalotiopsis fici PFICI_04606 I
PITC_097400 Penicillium italicum PITC_097400 I
PMAA_074650 Talaromyces marneffei PMAA_074650 I
PODANS_6_3420 Podospora anserina PODANS_6_3420 I
PTRG_02401 Pyrenophora triticirepentis PTRG_02401 I
PTT_10835 Pyrenophora teres PTT_10835 I
PV04_08241 Capronia semiimmersa PV04_08241 I
PV05_08638 Exophiala xenobiotica PV05_08638 I
PV06_02197 Exophiala oligosperma PV06_02197 I
PV07_11989 Cladophialophora immunda PV07_11989 I
PV08_11504 Exophiala spinifera PV08_11504 I
PV09_01829 Verruconis gallopava PV09_01829 I
PV10_02852 Exophiala mesophila PV10_02852 I
PV11_06636 Exophiala sideris PV11_06636 I
PVAR5_6826 Byssochlamys spectabilis PVAR5_6826 I
S40285_00991 Stachybotrys chlorohalonata S40285_00991 I
S40288_06219 Stachybotrys chartarum S40288_06219 I
SBOR_0009 Sclerotinia borealis SBOR_0009 I
SEPMUDRAFT_148320 Sphaerulina musiva SEPMUDRAFT_148320 I
SETTUDRAFT_86552 Setosphaeria turcica SETTUDRAFT_86552 I
SMAC_00882 Sordaria macrospora SMAC_00882 I
SNOG_06526 Phaeosphaeria nodorum SNOG_06526 I
SPBR_00103 Sporothrix brasiliensis SPBR_00103 I
SS1G_02930 Sclerotinia sclerotiorum SS1G_02930 I
TEQG_03625 Trichophyton equinum TEQG_03625 I
TESG_06519 Trichophyton tonsurans TESG_06519 I
THITE_2045084 Thielavia terrestris THITE_2045084 I
TRIATDRAFT_172139 Trichoderma atroviride TRIATDRAFT_172139 I
TRIREDRAFT_35454 Trichoderma reesei TRIREDRAFT_35454 I
TRIVIDRAFT_54183 Trichoderma virens TRIVIDRAFT_54183 I
TSTA_095240 Talaromyces stipitatus TSTA_095240 I
U727_0043044011 Penicillium solitum U727_0043044011 I
UCRNP2_2538 Neofusicoccum parvum UCRNP2_2538 I
UCRPA7_486 Togninia minima UCRPA7_486 I
UREG_07163 Uncinocarpus reesii UREG_07163 I
UV8b_2167 Ustilaginoidea virens UV8b_2167 I
V499_02941 Pseudogymnoascus pannorum V499_02941 I
VDAG_00659 Verticillium dahliae VDAG_00659 I
VDBG_01044 Verticillium alfalfae VDBG_01044 I
VHEMI03524 Torrubiella hemipterigena VHEMI03524 I
X797_005320 Metarhizium robertsii X797_005320 I
Z517_03416 Fonsecaea pedrosoi Z517_03416 I
Z518_06680 Rhinocladiella mackenziei Z518_06680 I
Z519_05285 Cladophialophora bantiana Z519_05285 I
e_gw1.1.122.1 Mycosphaerella graminicola e_gw1.1.122.1 I
e_gw1.13.532.1 Mycosphaerella fijiensis e_gw1.13.532.1 I
e_gw1.18.749.1 Nectria haematococca e_gw1.18.749.1 I
estExt_fgenesh2_pg.C_30542 Neurospora discreta estExt_fgenesh2_pg.C_30542 I
estExt_Genewise1Plus.C_110260 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_110260 I
pco-1 Neurospora crassa NCU07669 I
AB05039.1 Alternaria brassicicola AB05039.1 I
e_gw1.00141.1.1 Aspergillus carbonarius e_gw1.00141.1.1 I
estExt_fgenesh1_pm.C_30857 Cryphonectria parasitica estExt_fgenesh1_pm.C_30857 I
Pc06g01740 Penicillium chrysogenum Pc06g01740 I
PMAA_074650 Penicillium marneffei PMAA_074650 I