rfx7 (Xenopus tropicalis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 XB-GENE-1008447 T319081_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.792 0.987
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.792 0.987
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.792 0.987
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.792 0.987
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.709 0.608
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.709 0.608
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.709 0.608
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.709 0.608
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.709 0.608
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.709 0.608
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.709 0.608
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.709 0.608
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.709 0.608
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.709 0.608
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.709 0.608
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.709 0.608
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.709 0.608
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.709 0.608
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.709 0.608
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI33721 RFX 105 183

Links

Other RFX family TFs
Other Xenopus tropicalis TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SCLCIDRAFT_1225180 Scleroderma citrinum SCLCIDRAFT_1225180 N
PAXRUDRAFT_15625 Paxillus rubicundulus PAXRUDRAFT_15625 N
PAXRUDRAFT_33927 Paxillus rubicundulus PAXRUDRAFT_33927 N
PHACADRAFT_254049 Phanerochaete carnosa PHACADRAFT_254049 N
PILCRDRAFT_122351 Piloderma croceum PILCRDRAFT_122351 N
PILCRDRAFT_33349 Piloderma croceum PILCRDRAFT_33349 N
PISMIDRAFT_283095 Pisolithus microcarpus PISMIDRAFT_283095 N
PLEOSDRAFT_1060467 Pleurotus ostreatus PLEOSDRAFT_1060467 N
PLEOSDRAFT_1074679 Pleurotus ostreatus PLEOSDRAFT_1074679 N
POSPLDRAFT_135062 Postia placenta POSPLDRAFT_135062 N
POSPLDRAFT_47293 Postia placenta POSPLDRAFT_47293 N
SCHCODRAFT_86194 Schizophyllum commune SCHCODRAFT_86194 N
MVLG_00837 Microbotryum violaceum MVLG_00837 N
SERLA73DRAFT_176212 Serpula lacrymans SERLA73DRAFT_176212 N
SERLA73DRAFT_66208 Serpula lacrymans SERLA73DRAFT_66208 N
V565_015440 Rhizoctonia solani V565_015440 N
e_gw1.12.266.1 Mucor circinelloides e_gw1.12.266.1 N
e_gw1.7.560.1 Sporobolomyces roseus e_gw1.7.560.1 N
e_gwh2.25.53.1 Phanerochaete chrysosporium e_gwh2.25.53.1 N
e_gww2.7.722.1 Phanerochaete chrysosporium e_gww2.7.722.1 N
fgeneshPB_pg.11__148 Phycomyces blakesleeanus fgeneshPB_pg.11__148 N
gw1.1.1202.1 Heterobasidion annosum gw1.1.1202.1 N
gw1.8.218.1 Tremella mesenterica gw1.8.218.1 N
GYMLUDRAFT_174618 Gymnopus luxurians GYMLUDRAFT_174618 N
AGABI2DRAFT_197789 Agaricus bisporus AGABI2DRAFT_197789 N
BN946_scf185001.g47 Trametes cinnabarina BN946_scf185001.g47 N
BOTBODRAFT_112907 Botryobasidium botryosum BOTBODRAFT_112907 N
BOTBODRAFT_27262 Botryobasidium botryosum BOTBODRAFT_27262 N
CERSUDRAFT_114830 Ceriporiopsis subvermispora CERSUDRAFT_114830 N
CERSUDRAFT_115065 Ceriporiopsis subvermispora CERSUDRAFT_115065 N
DACRYDRAFT_36073 Dacryopinax sp DACRYDRAFT_36073 N
FOMPIDRAFT_1033652 Fomitopsis pinicola FOMPIDRAFT_1033652 N
FOMPIDRAFT_1085863 Fomitopsis pinicola FOMPIDRAFT_1085863 N
GALMADRAFT_233958 Galerina marginata GALMADRAFT_233958 N
GALMADRAFT_246744 Galerina marginata GALMADRAFT_246744 N
A1Q1_01999 Trichosporon asahii A1Q1_01999 N
HETIRDRAFT_181137 Heterobasidion irregulare HETIRDRAFT_181137 N
HYDPIDRAFT_99864 Hydnomerulius pinastri HYDPIDRAFT_99864 N
JAAARDRAFT_103126 Jaapia argillacea JAAARDRAFT_103126 N
M378DRAFT_34186 Amanita muscaria M378DRAFT_34186 N
M404DRAFT_998133 Pisolithus tinctorius M404DRAFT_998133 N
M407DRAFT_37211 Tulasnella calospora M407DRAFT_37211 N
M407DRAFT_60737 Tulasnella calospora M407DRAFT_60737 N
M413DRAFT_13613 Hebeloma cylindrosporum M413DRAFT_13613 N
M413DRAFT_237712 Hebeloma cylindrosporum M413DRAFT_237712 N
M422DRAFT_147299 Sphaerobolus stellatus M422DRAFT_147299 N