CpipJ_CPIJ016826 (Culex pipiens)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 CpipJ_CPIJ016826 T319280_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.779 0.779
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.779 0.779
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.779 0.779
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.779 0.779
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.779 0.779
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.779 0.779
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.779 0.779
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.779 0.779
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.779 0.779
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.779 0.779
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.779 0.779
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.779 0.779
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.768 0.768
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.768 0.768
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.768 0.768
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.768 0.768
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.768 0.768
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.768 0.768
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.768 0.768
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.768 0.768
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.768 0.768
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.768 0.768
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.768 0.768
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.768 0.768
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.747 0.747
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.747 0.747
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.747 0.747
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.747 0.747
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.747 0.747
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.747 0.747
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.747 0.747
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.747 0.747
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.747 0.747
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.747 0.747
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.747 0.747
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.747 0.747
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.737 0.737
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.737 0.737
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.737 0.737
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.737 0.737
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ016826-RA Runt 93 187

Links

Other Runt family TFs
Other Culex pipiens TFs

273 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPFOG00000004367 Poecilia formosa ENSPFOG00000004367 I 0.000
mxd1 Oryzias latipes ENSORLG00000015461 I 0.000
mxd1 Tetraodon nigroviridis ENSTNIG00000000414 I 0.000
ENSONIG00000015871 Oreochromis niloticus ENSONIG00000015871 I 0.000
ENSXMAG00000004566 Xiphophorus maculatus ENSXMAG00000004566 I 0.000
ENSLOCG00000015320 Lepisosteus oculatus ENSLOCG00000015320 I 0.000
mxd1 Gasterosteus aculeatus ENSGACG00000013215 I 0.000
mxd4 Tetraodon nigroviridis ENSTNIG00000018042 N 0.000
MXD4 Tursiops truncatus ENSTTRG00000013740 N 0.000
MXD4 Taeniopygia guttata ENSTGUG00000010530 N 0.000
ENSSTOG00000028770 Ictidomys tridecemlineatus ENSSTOG00000028770 N 0.000
MXD4 Sus scrofa ENSSSCG00000008687 N 0.000
ENSSHAG00000011878 Sarcophilus harrisii ENSSHAG00000011878 N 0.000
Mxd4 Rattus norvegicus ENSRNOG00000015033 N 0.000
MXD4 Pteropus vampyrus ENSPVAG00000011169 N 0.000
MXD4 Pan troglodytes ENSPTRG00000015844 N 0.000
ENSPSIG00000016320 Pelodiscus sinensis ENSPSIG00000016320 N 0.000
ENSPPYG00000014540 Pongo abelii ENSPPYG00000014540 N 0.000
ENSPFOG00000011915 Poecilia formosa ENSPFOG00000011915 N 0.000
mxd4 Takifugu rubripes ENSTRUG00000003046 N 0.000
mxd1.L Xenopus laevis XB-GENE-943720 N 0.000
ENSXMAG00000005473 Xiphophorus maculatus ENSXMAG00000005473 N 0.000
Aan_R001830 Calypte anna Aan_R001830 N 0.000
Afo_R015384 Aptenodytes forsteri Afo_R015384 N 0.000
Alligator_sinensis_CCG000560.1 Alligator sinensis Alligator_sinensis_CCG000560.1 N 0.000
ENSP00000337889 Macaca fascicularis ENSP00000337889 N 0.000
Gfo_R003202 Geospiza fortis Gfo_R003202 N 0.000
Ogr18275 Ophisaurus gracilis Ogr18275 N 0.000
Pvit_14853 Pogona vitticeps Pvit_14853 N 0.000
Tal_R007717 Tyto alba Tal_R007717 N 0.000
mxd4.L Xenopus laevis XB-GENE-6252709 N 0.000
mxd4.S Xenopus laevis XB-GENE-6256011 N 0.000
mxd4 Xenopus tropicalis XB-GENE-6257573 N 0.000
mxd1 Xenopus tropicalis XB-GENE-943715 N 0.000
MXD4 Anolis carolinensis ENSACAG00000007819 N 0.000
MXD4 Gorilla gorilla ENSGGOG00000000747 N 0.000
ENSAMEG00000014340 Ailuropoda melanoleuca ENSAMEG00000014340 N 0.000
ENSAPLG00000004997 Anas platyrhynchos ENSAPLG00000004997 N 0.000
MXD4 Bos taurus ENSBTAG00000015209 N 0.000
MXD4 Canis familiaris ENSCAFG00000014873 N 0.000
MXD4 Callithrix jacchus ENSCJAG00000014432 N 0.000
MXD4 Cavia porcellus ENSCPOG00000022492 N 0.000
ENSCSAG00000015741 Chlorocebus sabaeus ENSCSAG00000015741 N 0.000
mxd1 Danio rerio ENSDARG00000032039 N 0.000
mxd4 Danio rerio ENSDARG00000054031 N 0.000
MXD4 Equus caballus ENSECAG00000002580 N 0.000
MXD4 Echinops telfairi ENSETEG00000005547 N 0.000
ENSFALG00000009868 Ficedula albicollis ENSFALG00000009868 N 0.000
MXD4 Felis catus ENSFCAG00000012927 N 0.000
mxd4 Gasterosteus aculeatus ENSGACG00000017587 N 0.000
MXD4 Gallus gallus ENSGALG00000015688 N 0.000
MXD4 Procavia capensis ENSPCAG00000014133 N 0.000
ENSLACG00000006663 Latimeria chalumnae ENSLACG00000006663 N 0.000
MXD4 Loxodonta africana ENSLAFG00000026709 N 0.000
ENSLOCG00000002303 Lepisosteus oculatus ENSLOCG00000002303 N 0.000
ENSMEUG00000013427 Macropus eugenii ENSMEUG00000013427 N 0.000
MXD4 Meleagris gallopavo ENSMGAG00000013027 N 0.000
ENSMMUG00000001160 Macaca mulatta ENSMMUG00000001160 N 0.000
MXD4 Monodelphis domestica ENSMODG00000004033 N 0.000
ENSMPUG00000010989 Mustela putorius furo ENSMPUG00000010989 N 0.000
Mxd4 Mus musculus ENSMUSG00000037235 N 0.000
MXD4 Oryctolagus cuniculus ENSOCUG00000005063 N 0.000
MXD4 Otolemur garnettii ENSOGAG00000011305 N 0.000
ENSONIG00000017548 Oreochromis niloticus ENSONIG00000017548 N 0.000
mxd4 Oryzias latipes ENSORLG00000006439 N 0.000
ENSPANG00000024535 Papio anubis ENSPANG00000024535 N 0.000