CpipJ_CPIJ019508 (Culex pipiens)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 CpipJ_CPIJ019508 T319281_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.846 0.846
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.846 0.846
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.846 0.846
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.846 0.846
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.808 0.808
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.731 0.731
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.731 0.731
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.731 0.731
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.731 0.731
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.731 0.731
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.731 0.731
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.731 0.731
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.731 0.731
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.731 0.731
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.731 0.731
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.731 0.731
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.731 0.731
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.731 0.731
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.731 0.731
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.731 0.731
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.731 0.731
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.731 0.731
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.731 0.731
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.731 0.731
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.731 0.731
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.731 0.731
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.731 0.731
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.731 0.731
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ019508-RA Runt 1 26

Links

Other Runt family TFs
Other Culex pipiens TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RUNX2 Homo sapiens ENSG00000124813 D 0.731
RUNX1 Homo sapiens ENSG00000159216 D 0.000
Runx1 Mus musculus ENSMUSG00000022952 D 0.000
Runx2 Mus musculus ENSMUSG00000039153 D 0.731
ACEP16400 Atta cephalotes ACEP16400 I 0.000
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.000
RUNX3 Anolis carolinensis ENSACAG00000017855 I 0.000
ENSAMEG00000005325 Ailuropoda melanoleuca ENSAMEG00000005325 I 0.000
ENSAMEG00000009223 Ailuropoda melanoleuca ENSAMEG00000009223 I 0.000
ENSAMXG00000000881 Astyanax mexicanus ENSAMXG00000000881 I 0.000
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.000
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.000
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.000
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.000
ENSAPLG00000011653 Anas platyrhynchos ENSAPLG00000011653 I 0.000
ENSAPLG00000016439 Anas platyrhynchos ENSAPLG00000016439 I 0.000
RUNX2 Bos taurus ENSBTAG00000004104 I 0.000
RUNX1 Bos taurus ENSBTAG00000004742 I 0.000
RUNX3 Bos taurus ENSBTAG00000019800 I 0.000
RUNX1 Canis familiaris ENSCAFG00000009596 I 0.000
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.000
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.000
ENSCPOG00000002684 Cavia porcellus ENSCPOG00000002684 I 0.000
RUNX2 Cavia porcellus ENSCPOG00000005277 I 0.000
ENSCSAG00000008703 Chlorocebus sabaeus ENSCSAG00000008703 I 0.000
ENSCSAG00000012528 Chlorocebus sabaeus ENSCSAG00000012528 I 0.000
runx2a Danio rerio ENSDARG00000040261 I 0.000
runx3 Danio rerio ENSDARG00000052826 I 0.000
runx2b Danio rerio ENSDARG00000059233 I 0.000
CABZ01102124.1 Danio rerio ENSDARG00000103592 I 0.000
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.000
RUNX2 Dasypus novemcinctus ENSDNOG00000034361 I 0.000
RUNX3 Dasypus novemcinctus ENSDNOG00000043493 I 0.000
Runx1 Dipodomys ordii ENSDORG00000004347 I 0.000
RUNX1 Equus caballus ENSECAG00000003462 I 0.000
RUNX2 Equus caballus ENSECAG00000020875 I 0.000
RUNX2 Erinaceus europaeus ENSEEUG00000009243 I 0.000
ENSFALG00000000025 Ficedula albicollis ENSFALG00000000025 I 0.000
ENSFALG00000000470 Ficedula albicollis ENSFALG00000000470 I 0.000
ENSFALG00000001493 Ficedula albicollis ENSFALG00000001493 I 0.000
RUNX2 Felis catus ENSFCAG00000022480 I 0.000
ENSFCAG00000029032 Felis catus ENSFCAG00000029032 I 0.000
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.000
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.000
RUNX1 Gasterosteus aculeatus ENSGACG00000015276 I 0.000
RUNX1 Gallus gallus ENSGALG00000016022 I 0.000
ENSGALG00000026484 Gallus gallus ENSGALG00000026484 I 0.000
ENSGALG00000026821 Gallus gallus ENSGALG00000026821 I 0.000
RUNX1 Gorilla gorilla ENSGGOG00000012862 I 0.000
RUNX2 Gorilla gorilla ENSGGOG00000012890 I 0.000
ENSGMOG00000010468 Gadus morhua ENSGMOG00000010468 I 0.000
ENSGMOG00000014088 Gadus morhua ENSGMOG00000014088 I 0.000
ENSLACG00000011545 Latimeria chalumnae ENSLACG00000011545 I 0.000
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.000
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.000
RUNX1 Loxodonta africana ENSLAFG00000004290 I 0.000
RUNX2 Loxodonta africana ENSLAFG00000005054 I 0.000
RUNX3 Loxodonta africana ENSLAFG00000008382 I 0.000
ENSLOCG00000002744 Lepisosteus oculatus ENSLOCG00000002744 I 0.000
ENSLOCG00000015816 Lepisosteus oculatus ENSLOCG00000015816 I 0.000
ENSMEUG00000014419 Macropus eugenii ENSMEUG00000014419 I 0.000
RUNX2 Meleagris gallopavo ENSMGAG00000014267 I 0.000
ENSMGAG00000014534 Meleagris gallopavo ENSMGAG00000014534 I 0.000
RUNX1 Microcebus murinus ENSMICG00000011998 I 0.000
RUNX2 Myotis lucifugus ENSMLUG00000000514 I 0.000
RUNX3 Myotis lucifugus ENSMLUG00000003395 I 0.000
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.000
RUNX2 Macaca mulatta ENSMMUG00000019819 I 0.000
ENSMODG00000013941 Monodelphis domestica ENSMODG00000013941 I 0.000
RUNX2 Monodelphis domestica ENSMODG00000018912 I 0.000
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.000
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.000
ENSMPUG00000012508 Mustela putorius furo ENSMPUG00000012508 I 0.000
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.000
ENSNLEG00000003611 Nomascus leucogenys ENSNLEG00000003611 I 0.000
ENSNLEG00000004310 Nomascus leucogenys ENSNLEG00000004310 I 0.000
ENSNLEG00000009021 Nomascus leucogenys ENSNLEG00000009021 I 0.000
RUNX2 Ornithorhynchus anatinus ENSOANG00000008265 I 0.000
ENSOANG00000031074 Ornithorhynchus anatinus ENSOANG00000031074 I 0.000
ENSOARG00000006421 Ovis aries ENSOARG00000006421 I 0.000
ENSOARG00000013599 Ovis aries ENSOARG00000013599 I 0.000
ENSOCUG00000011739 Oryctolagus cuniculus ENSOCUG00000011739 I 0.000
RUNX1 Oryctolagus cuniculus ENSOCUG00000013731 I 0.000
RUNX2 Otolemur garnettii ENSOGAG00000003900 I 0.000
RUNX1 Otolemur garnettii ENSOGAG00000033362 I 0.000
ENSONIG00000001025 Oreochromis niloticus ENSONIG00000001025 I 0.000
ENSONIG00000004914 Oreochromis niloticus ENSONIG00000004914 I 0.000
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.000
ENSOPRG00000000765 Ochotona princeps ENSOPRG00000000765 I 0.000
RUNX2 Ochotona princeps ENSOPRG00000002943 I 0.000
runx2 Oryzias latipes ENSORLG00000010169 I 0.000
runx3 Oryzias latipes ENSORLG00000017515 I 0.000
ENSPANG00000006186 Papio anubis ENSPANG00000006186 I 0.000
ENSPANG00000007357 Papio anubis ENSPANG00000007357 I 0.000
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.000
ENSPFOG00000016115 Poecilia formosa ENSPFOG00000016115 I 0.000
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.000
ENSPPYG00000011394 Pongo abelii ENSPPYG00000011394 I 0.000
ENSPPYG00000016664 Pongo abelii ENSPPYG00000016664 I 0.000
ENSPSIG00000014293 Pelodiscus sinensis ENSPSIG00000014293 I 0.000
ENSPSIG00000017547 Pelodiscus sinensis ENSPSIG00000017547 I 0.000
RUNX1 Pan troglodytes ENSPTRG00000013883 I 0.000
RUNX2 Pan troglodytes ENSPTRG00000018228 I 0.000
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.000
Runx1 Rattus norvegicus ENSRNOG00000001704 I 0.000
Runx2 Rattus norvegicus ENSRNOG00000020193 I 0.000
ENSSHAG00000009950 Sarcophilus harrisii ENSSHAG00000009950 I 0.000
ENSSHAG00000012559 Sarcophilus harrisii ENSSHAG00000012559 I 0.000
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.000
ENSSSCG00000012051 Sus scrofa ENSSSCG00000012051 I 0.000
ENSSTOG00000010163 Ictidomys tridecemlineatus ENSSTOG00000010163 I 0.000
RUNX2 Tupaia belangeri ENSTBEG00000000948 I 0.000
RUNX3 Taeniopygia guttata ENSTGUG00000001130 I 0.000
ENSTGUG00000004719 Taeniopygia guttata ENSTGUG00000004719 I 0.000
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.000
runx2b Tetraodon nigroviridis ENSTNIG00000009685 I 0.000
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.000
ENSTNIG00000018690 Tetraodon nigroviridis ENSTNIG00000018690 I 0.000
runx3 Takifugu rubripes ENSTRUG00000001517 I 0.000
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.000
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.000
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.000
RUNX2 Tursiops truncatus ENSTTRG00000006943 I 0.000
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.000
ENSXMAG00000003400 Xiphophorus maculatus ENSXMAG00000003400 I 0.000
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.000
MESCA007078 Megaselia scalaris MESCA007078 I 0.000
Aan_R005895 Calypte anna Aan_R005895 I 0.000
Aan_R007315 Calypte anna Aan_R007315 I 0.000
Afo_R004888 Aptenodytes forsteri Afo_R004888 I 0.000
Afo_R008955 Aptenodytes forsteri Afo_R008955 I 0.000
Afo_R012718 Aptenodytes forsteri Afo_R012718 I 0.000
Alligator_sinensis_CCG001676.1 Alligator sinensis Alligator_sinensis_CCG001676.1 I 0.000
Brh_R000794 Buceros rhinoceros Brh_R000794 I 0.000
Brh_R001637 Buceros rhinoceros Brh_R001637 I 0.000
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.000
Cmyd_10020845 Chelonia mydas Cmyd_10020845 I 0.000
Cmyd_10021516 Chelonia mydas Cmyd_10021516 I 0.000
ENSBTAP00000006227-D1 Bos grunniens ENSBTAP00000006227-D1 I 0.000
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 0.000
ENSP00000352514 Macaca fascicularis ENSP00000352514 I 0.000
ENSP00000382800 Macaca fascicularis ENSP00000382800 I 0.000
ENSP00000409227-D1 Bos grunniens ENSP00000409227-D1 I 0.000
Gfo_R000714 Geospiza fortis Gfo_R000714 I 0.000
Gfo_R011596 Geospiza fortis Gfo_R011596 I 0.000
Myotis_brandtii_RUNX2_10026084 Myotis brandtii Myotis_brandtii_RUNX2_10026084 I 0.000
Ogr17914 Ophisaurus gracilis Ogr17914 I 0.000
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.000
Pvit_04762 Pogona vitticeps Pvit_04762 I 0.000
Pvit_17193 Pogona vitticeps Pvit_17193 I 0.000
Tal_R011874 Tyto alba Tal_R011874 I 0.000
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.000
runx2 Xenopus tropicalis XB-GENE-482021 I 0.000
runx3 Xenopus tropicalis XB-GENE-487784 I 0.000
runx2.L Xenopus laevis XB-GENE-864817 I 0.000
runx1.L Xenopus laevis XB-GENE-864949 I 0.000
XP_002939386 Xenopus tropicalis XP_002939386 I 0.000
XP_002939387 Xenopus tropicalis XP_002939387 I 0.000
XP_002939388 Xenopus tropicalis XP_002939388 I 0.000
AALB007752 Anopheles albimanus AALB007752 I 0.000
AMAM011616 Anopheles maculatus AMAM011616 I 0.800
PPAI006591 Phlebotomus papatasi PPAI006591 I 0.875