RUNX3 (Otolemur garnettii)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSOGAG00000025633 T319444_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		1.000 1.000
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		1.000 1.000
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		1.000 1.000
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		1.000 1.000
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		1.000 1.000
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		1.000 1.000
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		1.000 1.000
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		1.000 1.000
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		1.000 1.000
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		1.000 1.000
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		1.000 1.000
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		1.000 1.000
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.946 0.946
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.946 0.946
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.946 0.946
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.946 0.946
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.946 0.946
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.946 0.946
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.946 0.946
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.946 0.946
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.946 0.946
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.946 0.946
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.946 0.946
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.946 0.946
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.931 0.931
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.931 0.931
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.931 0.931
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.931 0.931
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.931 0.931
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.931 0.931
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.931 0.931
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.931 0.931
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.931 0.931
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.931 0.931
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.931 0.931
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.931 0.931
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.715 0.715
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.715 0.715
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.715 0.715
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.715 0.715
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000020044 Runt 19 148

Links

Other Runt family TFs
Other Otolemur garnettii TFs

278 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.000
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.000
Si001796m.g Setaria italica Si001796m.g N 0.000
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.000
TCM_030051 Theobroma cacao TCM_030051 N 0.000
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.000
Ca_00214 Cicer arietinum Ca_00214 N 0.000
Pm009855 Prunus mume Pm009855 N 0.000
29842.m003704 Ricinus communis 29842.m003704 N 0.000
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.000
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.000
mgf016565m Mimulus guttatus mgf016565m N 0.000
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.000
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.000
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.000
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.000
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.000
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.000
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.000
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.000
MDP0000301999 Malus domestica MDP0000301999 N 0.000
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.000
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.000
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.000
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.000
PK14284.1 Cannabis sativa PK14284.1 N 0.000
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.000
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.000
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.000
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.000
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.000
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.000
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.000
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.000
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.000
OB05G29420 Oryza brachyantha OB05G29420 N 0.000
OBART01G33360 Oryza barthii OBART01G33360 N 0.000
OBART05G21860 Oryza barthii OBART05G21860 N 0.000
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.000
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.000
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.000
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.000
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.000
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.000
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.000
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.000
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.000
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.000
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.000
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.000
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.000
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.000