PGSC0003DMG400013140 (Solanum tuberosum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 PGSC0003DMG400013140 T320675_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400034187 RWP-RK 434 482
PGSC0003DMT400034188 RWP-RK 598 646
PGSC0003DMT400034189 RWP-RK 598 646

Links

Other RWP-RK family TFs
Other Solanum tuberosum TFs

416 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSXMAG00000019580 Xiphophorus maculatus ENSXMAG00000019580 N 0.000
ENSPANG00000010852 Papio anubis ENSPANG00000010852 N 0.000
ENSPFOG00000020326 Poecilia formosa ENSPFOG00000020326 N 0.000
ENSPPYG00000011967 Pongo abelii ENSPPYG00000011967 N 0.000
ENSPSIG00000007193 Pelodiscus sinensis ENSPSIG00000007193 N 0.000
ZBED4 Pan troglodytes ENSPTRG00000014522 N 0.000
ZBED4 Pteropus vampyrus ENSPVAG00000005134 N 0.000
Zbed4 Rattus norvegicus ENSRNOG00000004588 N 0.000
ZBED4 Sorex araneus ENSSARG00000001048 N 0.000
ENSSTOG00000023379 Ictidomys tridecemlineatus ENSSTOG00000023379 N 0.000
zbed4 Tetraodon nigroviridis ENSTNIG00000006775 N 0.000
ZBED4 Tursiops truncatus ENSTTRG00000009815 N 0.000
ENSONIG00000009795 Oreochromis niloticus ENSONIG00000009795 N 0.000
Aan_R000409 Calypte anna Aan_R000409 N 0.000
Afo_R004342 Aptenodytes forsteri Afo_R004342 N 0.000
Brh_R004716 Buceros rhinoceros Brh_R004716 N 0.000
ENSP00000216268 Macaca fascicularis ENSP00000216268 N 0.000
Gfo_R008679 Geospiza fortis Gfo_R008679 N 0.000
Myotis_brandtii_ZBED4_10004868 Myotis brandtii Myotis_brandtii_ZBED4_10004868 N 0.000
Pvit_16079 Pogona vitticeps Pvit_16079 N 0.000
Tal_R001537 Tyto alba Tal_R001537 N 0.000
zbed4 Xenopus tropicalis XB-GENE-6076969 N 0.000
XP_002932233 Xenopus tropicalis XP_002932233 N 0.000
ENSLACG00000007168 Latimeria chalumnae ENSLACG00000007168 N 0.000
ENSAMXG00000025839 Astyanax mexicanus ENSAMXG00000025839 N 0.000
ENSAPLG00000001579 Anas platyrhynchos ENSAPLG00000001579 N 0.000
ZBED4 Canis familiaris ENSCAFG00000000714 N 0.000
ENSCPOG00000007711 Cavia porcellus ENSCPOG00000007711 N 0.000
ENSCSAG00000019288 Chlorocebus sabaeus ENSCSAG00000019288 N 0.000
zbed4 Danio rerio ENSDARG00000024306 N 0.000
ZBED4 Dasypus novemcinctus ENSDNOG00000018932 N 0.000
ENSFALG00000015280 Ficedula albicollis ENSFALG00000015280 N 0.000
ZBED4 Homo sapiens ENSG00000100426 N 0.000
zbed4 Gasterosteus aculeatus ENSGACG00000019008 N 0.000
ENSGALG00000008547 Gallus gallus ENSGALG00000008547 N 0.000
ZBED4 Anolis carolinensis ENSACAG00000009133 N 0.000
ZBED4 Loxodonta africana ENSLAFG00000017972 N 0.000
ENSLOCG00000017908 Lepisosteus oculatus ENSLOCG00000017908 N 0.000
ENSMEUG00000014660 Macropus eugenii ENSMEUG00000014660 N 0.000
ZBED4 Macaca mulatta ENSMMUG00000018833 N 0.000
ZBED4 Monodelphis domestica ENSMODG00000025433 N 0.000
ENSMPUG00000018768 Mustela putorius furo ENSMPUG00000018768 N 0.000
Zbed4 Mus musculus ENSMUSG00000034333 N 0.000
ENSNLEG00000018235 Nomascus leucogenys ENSNLEG00000018235 N 0.000
ENSOCUG00000029472 Oryctolagus cuniculus ENSOCUG00000029472 N 0.000
ZBED4 Otolemur garnettii ENSOGAG00000013251 N 0.000