Carubv10021541m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10021541m.g T321098_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.918 0.918
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.918 0.918
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021541m RWP-RK 134 182

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtbZIP7 Arabidopsis lyrata Al_scaffold_0007_270 N 0.000
AtbZIP6 Arabidopsis thaliana AT2G22850 N 0.000
AtbZIP7 Arabidopsis thaliana AT4G37730 N 0.000
AtbZIP6 Arabidopsis lyrata scaffold_400242.1 N 0.000
Cla014262 Citrullus lanatus Cla014262 N 0.000
Cucsa.103380 Cucumis sativus Cucsa.103380 N 0.000
Bostr.19427s0055 Boechera stricta Bostr.19427s0055 N 0.000
Bostr.7867s1634 Boechera stricta Bostr.7867s1634 N 0.000
Cagra.4290s0007 Capsella grandiflora Cagra.4290s0007 N 0.000
Cagra.9757s0009 Capsella grandiflora Cagra.9757s0009 N 0.000
Carubv10007844m.g Capsella rubella Carubv10007844m.g N 0.000
Carubv10024747m.g Capsella rubella Carubv10024747m.g N 0.000
Thhalv10000309m.g Eutrema salsugineum Thhalv10000309m.g N 0.000
Thhalv10027117m.g Eutrema salsugineum Thhalv10027117m.g N 0.000