Pavir.J12413 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.J12413 T321229_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.783 0.783
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J12413.1.p RWP-RK 500 522

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa000933mg Prunus persica PRUPE_ppa000933mg I 0.739
Eucgr.E01022 Eucalyptus grandis Eucgr.E01022 I 0.826
Ciclev10018669m.g Citrus clementina Ciclev10018669m.g I 0.739
Aquca_010_00024 Aquilegia coerulea Aquca_010_00024 I 0.783
mgf013203m Mimulus guttatus mgf013203m I 0.826
cassava7989.valid.m1 Manihot esculenta cassava7989.valid.m1 I 0.739
Pm022106 Prunus mume Pm022106 I 0.739
Pm020817 Prunus mume Pm020817 I 0.739
TCM_019949 Theobroma cacao TCM_019949 I 0.739
Solyc08g008410.2 Solanum lycopersicum Solyc08g008410.2 I 0.826
evm.TU.supercontig_9.328 Carica papaya evm.TU.supercontig_9.328 I 0.739
POPTR_0003s14300 Populus trichocarpa POPTR_0003s14300 I 0.826
POPTR_0001s10970 Populus trichocarpa POPTR_0001s10970 I 0.826
PGSC0003DMG402012256 Solanum tuberosum PGSC0003DMG402012256 I 0.826
PGSC0003DMG401005796 Solanum tuberosum PGSC0003DMG401005796 I 0.826
OS04G0495800 Oryza sativa OS04G0495800 I 0.739
NLP3 Oryza sativa OS01G0236700 I 0.870
ORUFI11G09500 Oryza rufipogon ORUFI11G09500 I 0.783
ORUFI04G18750 Oryza rufipogon ORUFI04G18750 I 0.739
MDP0000788505 Malus domestica MDP0000788505 I 0.826
chr3.LjT23H01.20.nc Lotus japonicus chr3.LjT23H01.20.nc I 0.739
chr2.CM0904.130.nd Lotus japonicus chr2.CM0904.130.nd I 0.870
PK00728.1 Cannabis sativa PK00728.1 I 0.739
Thhalv10023271m.g Eutrema salsugineum Thhalv10023271m.g I 0.826
SapurV1A.3634s0010 Salix purpurea SapurV1A.3634s0010 I 0.739
SapurV1A.0374s0230 Salix purpurea SapurV1A.0374s0230 I 0.739
SapurV1A.0035s0170 Salix purpurea SapurV1A.0035s0170 I 0.783
orange1.1g001774m.g Citrus sinensis orange1.1g001774m.g I 0.739
ORUFI01G09470 Oryza rufipogon ORUFI01G09470 I 0.870
MDP0000265619 Malus domestica MDP0000265619 I 0.739
MDP0000246881 Malus domestica MDP0000246881 I 0.739
MDP0000239938 Malus domestica MDP0000239938 I 0.739
MDP0000132856 Malus domestica MDP0000132856 I 0.870
Lus10003199.g Linum usitatissimum Lus10003199.g I 0.826
Gorai.005G126000 Gossypium raimondii Gorai.005G126000 I 0.739
Gorai.002G206700 Gossypium raimondii Gorai.002G206700 I 0.739
gene16194-v1.0-hybrid Fragaria vesca gene16194-v1.0-hybrid I 0.739
GLYMA11G13390 Glycine max GLYMA11G13390 I 0.739
NLP6 Arabidopsis thaliana AT1G64530 I 0.826
OB01G18870 Oryza brachyantha OB01G18870 I 0.870
MTR_4g068000 Medicago truncatula MTR_4g068000 I 0.739
MLOC_66539 Hordeum vulgare MLOC_66539 I 0.808
LPERR01G07660 Leersia perrieri LPERR01G07660 I 0.870
GRMZM2G176655 Zea mays GRMZM2G176655 I 0.783
GRMZM2G042278 Zea mays GRMZM2G042278 I 0.739
GLYMA12G05390 Glycine max GLYMA12G05390 I 0.739
OB04G24560 Oryza brachyantha OB04G24560 I 0.739
GLYMA09G25230 Glycine max GLYMA09G25230 I 0.783
fgenesh2_kg.2__24__AT1G64530.1 Arabidopsis lyrata fgenesh2_kg.2__24__AT1G64530.1 I 0.826
BRADI2G31710 Brachypodium distachyon BRADI2G31710 I 0.826
Bra040914 Brassica rapa Bra040914 I 0.826
Bo9g032270 Brassica oleracea Bo9g032270 I 0.826
BGIOSGA034185 Oryza indica BGIOSGA034185 I 0.783
BGIOSGA016686 Oryza indica BGIOSGA016686 I 0.739
BGIOSGA003095 Oryza indica BGIOSGA003095 I 0.870
OMERI04G14630 Oryza meridionalis OMERI04G14630 I 0.739
ORGLA11G0080000 Oryza glaberrima ORGLA11G0080000 I 0.783
ORGLA04G0144400 Oryza glaberrima ORGLA04G0144400 I 0.739
ORGLA01G0077900 Oryza glaberrima ORGLA01G0077900 I 0.870
OPUNC01G08520 Oryza punctata OPUNC01G08520 I 0.870
ONIVA11G08980 Oryza nivara ONIVA11G08980 I 0.783
ONIVA04G15630 Oryza nivara ONIVA04G15630 I 0.739
ONIVA01G11240 Oryza nivara ONIVA01G11240 I 0.870
OMERI11G08010 Oryza meridionalis OMERI11G08010 I 0.783
OBART01G08660 Oryza barthii OBART01G08660 I 0.870
OMERI01G08690 Oryza meridionalis OMERI01G08690 I 0.870
OLONG_009319 Oryza longistaminata OLONG_009319 I 0.739
OLONG_006342 Oryza longistaminata OLONG_006342 I 0.783
OLONG_005878 Oryza longistaminata OLONG_005878 I 0.870
OGLUM11G08660 Oryza glumaepatula OGLUM11G08660 I 0.783
OGLUM01G09910 Oryza glumaepatula OGLUM01G09910 I 0.870
OBART04G17320 Oryza barthii OBART04G17320 I 0.739
Bra000308 Brassica rapa Bra000308 N 0.739
LPERR04G13900 Leersia perrieri LPERR04G13900 N 0.739