Bra030040 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra030040 T322474_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.980 0.947
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.974 0.933
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.974 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030040.1-P SBP 172 246

Links

Other SBP family TFs
Other Brassica rapa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSHAG00000007757 Sarcophilus harrisii ENSSHAG00000007757 N 0.000
Tcf15 Mus musculus ENSMUSG00000068079 N 0.000
ENSNLEG00000009426 Nomascus leucogenys ENSNLEG00000009426 N 0.000
ENSOARG00000019015 Ovis aries ENSOARG00000019015 N 0.000
TCF15 Oryctolagus cuniculus ENSOCUG00000000528 N 0.000
TCF15 Otolemur garnettii ENSOGAG00000015444 N 0.000
ENSONIG00000003151 Oreochromis niloticus ENSONIG00000003151 N 0.000
ENSONIG00000016756 Oreochromis niloticus ENSONIG00000016756 N 0.000
tcf15 Oryzias latipes ENSORLG00000015082 N 0.000
ENSPANG00000013449 Papio anubis ENSPANG00000013449 N 0.000
ENSPFOG00000007762 Poecilia formosa ENSPFOG00000007762 N 0.000
TCF15 Pteropus vampyrus ENSPVAG00000012767 N 0.000
Tcf15 Rattus norvegicus ENSRNOG00000000012 N 0.000
TCF15 Monodelphis domestica ENSMODG00000019526 N 0.000
ENSSSCG00000007202 Sus scrofa ENSSSCG00000007202 N 0.000
TCF15 Taeniopygia guttata ENSTGUG00000006794 N 0.000
tcf15 Tetraodon nigroviridis ENSTNIG00000012471 N 0.000
tcf15 Takifugu rubripes ENSTRUG00000007678 N 0.000
TCF15 Tursiops truncatus ENSTTRG00000007058 N 0.000
ENSXMAG00000011591 Xiphophorus maculatus ENSXMAG00000011591 N 0.000
Alligator_sinensis_CCG000360.1 Alligator sinensis Alligator_sinensis_CCG000360.1 N 0.000
ENSP00000246080-D1 Bos grunniens ENSP00000246080-D1 N 0.000
Gfo_R005304 Geospiza fortis Gfo_R005304 N 0.000
Pvit_17687 Pogona vitticeps Pvit_17687 N 0.000
tcf15 Xenopus tropicalis XB-GENE-488935 N 0.000
tcf15.L Xenopus laevis XB-GENE-6252545 N 0.000
TCF15 Gasterosteus aculeatus ENSGACG00000011390 N 0.000
ENSAMXG00000001669 Astyanax mexicanus ENSAMXG00000001669 N 0.000
TCF15 Bos taurus ENSBTAG00000005750 N 0.000
TCF15 Canis familiaris ENSCAFG00000006930 N 0.000
TCF15 Callithrix jacchus ENSCJAG00000020866 N 0.000
ENSCSAG00000010467 Chlorocebus sabaeus ENSCSAG00000010467 N 0.000
tcf15 Danio rerio ENSDARG00000067544 N 0.000
TCF15 Dasypus novemcinctus ENSDNOG00000045300 N 0.000
ENSDORG00000013778 Dipodomys ordii ENSDORG00000013778 N 0.000
TCF15 Equus caballus ENSECAG00000002411 N 0.000
TCF15 Echinops telfairi ENSETEG00000009717 N 0.000
ENSFALG00000005713 Ficedula albicollis ENSFALG00000005713 N 0.000
TCF15 Homo sapiens ENSG00000125878 N 0.000
TCF15 Anolis carolinensis ENSACAG00000011172 N 0.000
tcf15 Gasterosteus aculeatus ENSGACG00000011799 N 0.000
TCF15 Gallus gallus ENSGALG00000026276 N 0.000
TCF15 Gorilla gorilla ENSGGOG00000015133 N 0.000
ENSGMOG00000019517 Gadus morhua ENSGMOG00000019517 N 0.000
ENSLACG00000000721 Latimeria chalumnae ENSLACG00000000721 N 0.000
TCF15 Loxodonta africana ENSLAFG00000001884 N 0.000
ENSLOCG00000002219 Lepisosteus oculatus ENSLOCG00000002219 N 0.000
TCF15 Meleagris gallopavo ENSMGAG00000007877 N 0.000
TCF15 Microcebus murinus ENSMICG00000004647 N 0.000
TCF15 Myotis lucifugus ENSMLUG00000014021 N 0.000
TCF15 Macaca mulatta ENSMMUG00000022546 N 0.000