Ca_07299 (Cicer arietinum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Ca_07299 T323168_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.939 0.693
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.939 0.693
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.939 0.693
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.931 0.733
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.924 0.707
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.901 0.693
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.901 0.693
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.901 0.693
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.895 0.680
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.895 0.680
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.895 0.680
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.894 0.653
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.891 0.680
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.891 0.667
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.888 0.667
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.888 0.667
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.888 0.667
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.888 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_07299 SBP 58 132

Links

Other SBP family TFs
Other Cicer arietinum TFs

312 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si019641m.g Setaria italica Si019641m.g I
ONIVA04G09120 Oryza nivara ONIVA04G09120 I
ONIVA08G04340 Oryza nivara ONIVA08G04340 I
OPUNC04G09190 Oryza punctata OPUNC04G09190 I
OPUNC08G04370 Oryza punctata OPUNC08G04370 I
ORGLA08G0039300 Oryza glaberrima ORGLA08G0039300 I
ORUFI04G12370 Oryza rufipogon ORUFI04G12370 I
ORUFI08G04980 Oryza rufipogon ORUFI08G04980 I
OS04G0399800 Oryza sativa OS04G0399800 I
OS08G0173700 Oryza sativa OS08G0173700 I
POPTR_0019s11780 Populus trichocarpa POPTR_0019s11780 I
Sb06g014800 Sorghum bicolor Sb06g014800 I
Si012587m.g Setaria italica Si012587m.g I
OMERI04G09670 Oryza meridionalis OMERI04G09670 I
TCM_036616 Theobroma cacao TCM_036616 I
cassava21477.m1 Manihot esculenta cassava21477.m1 I
Bostr.13671s0161 Boechera stricta Bostr.13671s0161 I
Cagra.0568s0211 Capsella grandiflora Cagra.0568s0211 I
Carubv10012659m.g Capsella rubella Carubv10012659m.g I
Pavir.Aa01903 Panicum virgatum Pavir.Aa01903 I
Pavir.Ab01422 Panicum virgatum Pavir.Ab01422 I
Pavir.Gb01913 Panicum virgatum Pavir.Gb01913 I
Pavir.J16868 Panicum virgatum Pavir.J16868 I
SapurV1A.1095s0050 Salix purpurea SapurV1A.1095s0050 I
Thhalv10008615m.g Eutrema salsugineum Thhalv10008615m.g I
Thhalv10009328m.g Eutrema salsugineum Thhalv10009328m.g I
GRMZM2G047999 Zea mays GRMZM2G047999 I
ERF088 Arabidopsis thaliana AT1G12890 I
BGIOSGA016321 Oryza indica BGIOSGA016321 I
BGIOSGA027571 Oryza indica BGIOSGA027571 I
Bo2g011600 Brassica oleracea Bo2g011600 I
Bo8g107890 Brassica oleracea Bo8g107890 I
Bra006222 Brassica rapa Bra006222 I
Bra023440 Brassica rapa Bra023440 I
Bra026949 Brassica rapa Bra026949 I
fgenesh2_kg.1__1396__AT1G12890.1 Arabidopsis lyrata fgenesh2_kg.1__1396__AT1G12890.1 I
GLYMA10G36300 Glycine max GLYMA10G36300 I
GLYMA20G31293 Glycine max GLYMA20G31293 I
GRMZM2G023708 Zea mays GRMZM2G023708 I
AMTR_s00057p00191330 Amborella trichopoda AMTR_s00057p00191330 I
GRMZM2G079825 Zea mays GRMZM2G079825 I
GSMUA_Achr6G35320_001 Musa acuminata GSMUA_Achr6G35320_001 I
GSMUA_Achr7G17910_001 Musa acuminata GSMUA_Achr7G17910_001 I
LPERR02G14670 Leersia perrieri LPERR02G14670 I
LPERR04G07940 Leersia perrieri LPERR04G07940 I
LPERR08G04370 Leersia perrieri LPERR08G04370 I
MTR_1g097190 Medicago truncatula MTR_1g097190 I
OB02G26200 Oryza brachyantha OB02G26200 I
OB04G18290 Oryza brachyantha OB04G18290 I
OGLUM04G10880 Oryza glumaepatula OGLUM04G10880 I
OGLUM08G04690 Oryza glumaepatula OGLUM08G04690 I