cassava46941.m1 (Manihot esculenta)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 cassava46941.m1 T323248_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.896 0.787
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.896 0.787
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.896 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava46941.m1 SBP 56 130

Links

Other SBP family TFs
Other Manihot esculenta TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_1g048720 Medicago truncatula MTR_1g048720 N