Carubv10009364m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10009364m.g T323412_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.983 0.933
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.983 0.933
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.977 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009364m SBP 176 250
Carubv10009923m SBP 67 141

Links

Other SBP family TFs
Other Capsella rubella TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
REB1 Saccharomyces cerevisiae YBR049C D
SKUD_123301 Saccharomyces kudriavzevii SKUD_123301 I
Kwal_22993 Kluyveromyces waltii Kwal_22993 I
KLTH0C07788g Kluyveromyces thermotolerans KLTH0C07788g I
746_YFL003C Saccharomyces bayanus 746_YFL003C I
3333_Multiple Saccharomyces mikatae 3333_Multiple I
21379_Multiple Saccharomyces bayanus 21379_Multiple I
1177_YBR049C Saccharomyces paradoxus 1177_YBR049C I
Scas_Contig661.16 Saccharomyces castellii Scas_Contig661.16 I
TDEL_0D03690 Torulaspora delbrueckii TDEL_0D03690 I
AACERI_AaceriABL092W Saccharomycetaceae sp ashbya aceri AACERI_AaceriABL092W I
NDAI_0A05820 Naumovozyma dairenensis NDAI_0A05820 I
NCAS_0I01690 Naumovozyma castellii NCAS_0I01690 I
NCAS_0A10470 Naumovozyma castellii NCAS_0A10470 I
LALA0_S02e08900g Lachancea lanzarotensis LALA0_S02e08900g I
KNAG_0H01320 Kazachstania naganishii KNAG_0H01320 I
KLTH0C07788g Lachancea thermotolerans KLTH0C07788g I
KAFR_0E01200 Kazachstania africana KAFR_0E01200 I
Ecym_5138 Eremothecium cymbalariae Ecym_5138 I
AGOS_ABL092W Ashbya gossypii AGOS_ABL092W I