Ciclev10031834m.g (Citrus clementina)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Ciclev10031834m.g T323439_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.970 0.867
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.926 0.733
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.921 0.680
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.921 0.720
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.915 0.720
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.913 0.720
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.913 0.720
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.913 0.720
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.910 0.707
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.905 0.680
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.905 0.680
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.905 0.680
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.904 0.627
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.901 0.640
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.895 0.720
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10031834m SBP 88 162

Links

Other SBP family TFs
Other Citrus clementina TFs

450 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PHUM533080 Pediculus humanus PHUM533080 I
PPAI004956 Phlebotomus papatasi PPAI004956 I
LLOJ006615 Lutzomyia longipalpis LLOJ006615 I
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I
SINV24483 Solenopsis invicta SINV24483 I
ACEP14716 Atta cephalotes ACEP14716 I
MCINX007129 Melitaea cinxia MCINX007129 I
KGM_04261 Danaus plexippus KGM_04261 I
HMEL016424 Heliconius melpomene HMEL016424 I
GB47180 Apis mellifera GB47180 I
ENSOANG00000022637 Ornithorhynchus anatinus ENSOANG00000022637 I
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I
NV15957 Nasonia vitripennis NV15957 N
GB54865 Apis mellifera GB54865 N
Cflo_01074--XP_394229.2_APIME Camponotus floridanus Cflo_01074--XP_394229.2_APIME N
Hsal_00608--XP_394229.2_APIME Harpegnathos saltator Hsal_00608--XP_394229.2_APIME N
LDEC000156 Leptinotarsa decemlineata LDEC000156 N
AFAF002703 Anopheles farauti AFAF002703 N
AFUN015812 Anopheles funestus AFUN015812 N
AFUN015813 Anopheles funestus AFUN015813 N
ACEP26693 Atta cephalotes ACEP26693 N