CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Nfic
(
Mus musculus
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03165 (MH1)
IPR003619
ENSMUSG00000055053
T324773_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Acts upstream of or within odontogenesis of dentin-containing tooth. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; retina nuclear layer; and skeletal musculature. Orthologous to human NFIC (nuclear factor I C). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN
NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.978
0.978
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.978
0.978
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.978
0.978
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV
BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.978
0.978
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.978
0.978
NFIC
M11278_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.978
0.978
NFIC
M11279_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.978
0.978
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.978
0.978
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
0.868
0.868
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN
NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
0.868
0.868
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
0.868
0.868
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
0.868
0.868
NFIA
M11282_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
0.868
0.868
Nfia
M11291_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
0.868
0.868
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.824
0.824
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN
NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.824
0.824
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN
NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.824
0.824
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.824
0.824
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.824
0.824
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.824
0.824
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
0.813
0.813
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
0.813
0.813
Nfib
M09381_2.00
Mus musculus
BVWGCCARV
BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
0.813
0.813
NFIB
M11280_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
0.813
0.813
NFIB
M11281_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
0.813
0.813
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
0.813
0.813
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.802
0.802
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000020461
SMAD
69
173
KQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAV
ENSMUSP00000077317
SMAD
69
173
KQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAV
ENSMUSP00000100958
SMAD
69
173
KQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAV
ENSMUSP00000113046
SMAD
60
164
KQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAV
Links
Other
SMAD
family TFs
Other
Mus musculus
TFs
367 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy