YAB1 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT2G45190 T326478_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00		 Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.707 0.932
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.707 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.705
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.705
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00890_2.00 Sox 141 184

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G45190.1 Sox 141 184
AT2G45190.2 Sox 77 120

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATAD2A Sorex araneus ENSSARG00000005282 N
ENSTSYG00000000285 Tarsius syrichta ENSTSYG00000000285 N
gatad2ab Takifugu rubripes ENSTRUG00000018122 N
gatad2ab Tetraodon nigroviridis ENSTNIG00000013200 N
GATAD2A Taeniopygia guttata ENSTGUG00000013885 N
GATAD2A Tupaia belangeri ENSTBEG00000015854 N
ENSSTOG00000022640 Ictidomys tridecemlineatus ENSSTOG00000022640 N
GATAD2A Sus scrofa ENSSSCG00000013938 N
ENSSHAG00000013178 Sarcophilus harrisii ENSSHAG00000013178 N
GATAD2A Tursiops truncatus ENSTTRG00000009875 N
GATAD2A Pan troglodytes ENSPTRG00000010739 N
ENSPSIG00000015717 Pelodiscus sinensis ENSPSIG00000015717 N
ENSPPYG00000009769 Pongo abelii ENSPPYG00000009769 N
ENSPMAG00000000934 Petromyzon marinus ENSPMAG00000000934 N
ENSPFOG00000003089 Poecilia formosa ENSPFOG00000003089 N
ENSPFOG00000002553 Poecilia formosa ENSPFOG00000002553 N
GATAD2A Procavia capensis ENSPCAG00000011514 N
ENSPANG00000011632 Papio anubis ENSPANG00000011632 N
ENSP00000384899 Macaca fascicularis ENSP00000384899 N
gatad2a.S Xenopus laevis XB-GENE-17340391 N
gatad2a.L Xenopus laevis XB-GENE-1015735 N
gatad2a Xenopus tropicalis XB-GENE-1015730 N
Tal_R009898 Tyto alba Tal_R009898 N
Pvit_05963 Pogona vitticeps Pvit_05963 N
Ogr08049 Ophisaurus gracilis Ogr08049 N
Myotis_brandtii_GATAD2A_10018560 Myotis brandtii Myotis_brandtii_GATAD2A_10018560 N
Gfo_R007527 Geospiza fortis Gfo_R007527 N
gatad2ab Oryzias latipes ENSORLG00000000720 N
ENSP00000384899-D1 Bos grunniens ENSP00000384899-D1 N
Cmyd_10015463 Chelonia mydas Cmyd_10015463 N
Brh_R006311 Buceros rhinoceros Brh_R006311 N
Alligator_sinensis_CCG003108.1 Alligator sinensis Alligator_sinensis_CCG003108.1 N
Afo_R002412 Aptenodytes forsteri Afo_R002412 N
ENSXMAG00000012323 Xiphophorus maculatus ENSXMAG00000012323 N
GATAD2A Vicugna pacos ENSVPAG00000003278 N
GATAD2A Equus caballus ENSECAG00000012875 N
GATAD2A Gorilla gorilla ENSGGOG00000005973 N
ENSGALG00000002928 Gallus gallus ENSGALG00000002928 N
gatad2ab Gasterosteus aculeatus ENSGACG00000013045 N
GATAD2A Homo sapiens ENSG00000167491 N
GATAD2A Felis catus ENSFCAG00000014327 N
ENSFALG00000009125 Ficedula albicollis ENSFALG00000009125 N
GATAD2A Echinops telfairi ENSETEG00000002642 N
GATAD2A Erinaceus europaeus ENSEEUG00000004680 N
ENSGMOG00000007431 Gadus morhua ENSGMOG00000007431 N
Gatad2a Dipodomys ordii ENSDORG00000008536 N
GATAD2A Dasypus novemcinctus ENSDNOG00000041689 N
ENSCSAG00000005096 Chlorocebus sabaeus ENSCSAG00000005096 N
GATAD2A Cavia porcellus ENSCPOG00000015396 N
GATAD2A Callithrix jacchus ENSCJAG00000005685 N
GATAD2A Canis familiaris ENSCAFG00000014267 N
GATAD2A Bos taurus ENSBTAG00000003034 N
ENSAPLG00000006218 Anas platyrhynchos ENSAPLG00000006218 N
ENSMMUG00000022298 Macaca mulatta ENSMMUG00000022298 N
ENSONIG00000002454 Oreochromis niloticus ENSONIG00000002454 N
GATAD2A Otolemur garnettii ENSOGAG00000007442 N
GATAD2A Oryctolagus cuniculus ENSOCUG00000017513 N
ENSOARG00000007874 Ovis aries ENSOARG00000007874 N
GATAD2A Ornithorhynchus anatinus ENSOANG00000006409 N
ENSNLEG00000006277 Nomascus leucogenys ENSNLEG00000006277 N
ENSMPUG00000015399 Mustela putorius furo ENSMPUG00000015399 N
GATAD2A Monodelphis domestica ENSMODG00000007189 N
ENSAMEG00000011882 Ailuropoda melanoleuca ENSAMEG00000011882 N
GATAD2A Myotis lucifugus ENSMLUG00000017364 N
GATAD2A Microcebus murinus ENSMICG00000015636 N
GATAD2A Meleagris gallopavo ENSMGAG00000004036 N
ENSMEUG00000011728 Macropus eugenii ENSMEUG00000011728 N
ENSLOCG00000004919 Lepisosteus oculatus ENSLOCG00000004919 N
GATAD2A Loxodonta africana ENSLAFG00000009470 N
ENSLACG00000008883 Latimeria chalumnae ENSLACG00000008883 N