HMGB2 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 fgenesh2_kg.1__2255__AT1G20693.2 T329854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.702 0.739
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__2255__AT1G20693.2 Sox 38 107

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

349 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LEU3 Saccharomyces cerevisiae YLR451W D 0.000
ZBAI_07505 Zygosaccharomyces bailii ZBAI_07505 I 0.000
NCAS_0H00270 Naumovozyma castellii NCAS_0H00270 I 0.000
NDAI_0D00220 Naumovozyma dairenensis NDAI_0D00220 I 0.000
SPAPADRAFT_152650 Spathaspora passalidarum SPAPADRAFT_152650 I 0.000
SU7_2407 Saccharomyces arboricola SU7_2407 I 0.000
TBLA_0F02920 Tetrapisispora blattae TBLA_0F02920 I 0.000
TDEL_0H00590 Torulaspora delbrueckii TDEL_0H00590 I 0.000
TPHA_0G00380 Tetrapisispora phaffii TPHA_0G00380 I 0.000
ZBAI_01033 Zygosaccharomyces bailii ZBAI_01033 I 0.000
BN7_4573 Wickerhamomyces ciferrii BN7_4573 I 0.000
ZYRO0D01650g Zygosaccharomyces rouxii ZYRO0D01650g I 0.000
e_gww1.5.1.126.1 Pichia stipitis e_gww1.5.1.126.1 I 0.000
Scas_Contig691.32 Saccharomyces castellii Scas_Contig691.32 I 0.000
15147_YLR451W Saccharomyces paradoxus 15147_YLR451W I 0.000
15505_Multiple Saccharomyces mikatae 15505_Multiple I 0.000
17250_YLR451W Saccharomyces bayanus 17250_YLR451W I 0.000
KLTH0F18392g Kluyveromyces thermotolerans KLTH0F18392g I 0.000
Kwal_21884 Kluyveromyces waltii Kwal_21884 I 0.000
SAKL0F15444g Lachancea kluyveri SAKL0F15444g I 0.000
LALA0_S01e18382g Lachancea lanzarotensis LALA0_S01e18382g I 0.000
CPAG_00528 Candida parapsilosis CPAG_00528 I 0.000
CAGL0H00396g Candida glabrata CAGL0H00396g I 0.000
CANTEDRAFT_103499 Candida tenuis CANTEDRAFT_103499 I 0.000
CaO19.11700 Candida albicans CaO19.11700 I 0.000
CaO19.4225 Candida albicans CaO19.4225 I 0.000
CD36_52000 Candida dubliniensis CD36_52000 I 0.000
CORT_0B02970 Candida orthopsilosis CORT_0B02970 I 0.000
CTRG_03202 Candida tropicalis CTRG_03202 I 0.000
DEHA2E10120g Debaryomyces hansenii DEHA2E10120g I 0.000
Ecym_7203 Eremothecium cymbalariae Ecym_7203 I 0.000
G210_1528 Candida maltosa G210_1528 I 0.000
GNLVRS01_PISO0K11296g Millerozyma farinosa GNLVRS01_PISO0K11296g I 0.000
GNLVRS01_PISO0L11297g Millerozyma farinosa GNLVRS01_PISO0L11297g I 0.000
HPODL_00249 Ogataea parapolymorpha HPODL_00249 I 0.000
KLTH0F18392g Lachancea thermotolerans KLTH0F18392g I 0.000
KNAG_0D05240 Kazachstania naganishii KNAG_0D05240 I 0.000
Kpol_1008p13 Vanderwaltozyma polyspora Kpol_1008p13 I 0.000
LELG_03934 Lodderomyces elongisporus LELG_03934 I 0.000
PAS_chr3_0759 Komagataella pastoris PAS_chr3_0759 N 0.000
XP_002492988.1 Pichia pastoris XP_002492988.1 N 0.000