GRMZM2G066528 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G066528 T330324_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.600 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G066528_P01 Sox 28 97
GRMZM2G066528_P02 Sox 28 97
GRMZM2G066528_P03 Sox 28 97
GRMZM2G066528_P04 Sox 28 97

Links

Other Sox family TFs
Other Zea mays TFs

289 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC055 Arabidopsis thaliana AT3G15500 D 0.000
NAC019 Arabidopsis thaliana AT1G52890 D 0.000
cassava42313.valid.m1 Manihot esculenta cassava42313.valid.m1 I 0.000
chr3.CM0590.390.nd Lotus japonicus chr3.CM0590.390.nd I 0.000
Cucsa.074610 Cucumis sativus Cucsa.074610 I 0.000
Aquca_024_00080 Aquilegia coerulea Aquca_024_00080 I 0.000
Bostr.0124s0082 Boechera stricta Bostr.0124s0082 I 0.000
Bostr.28625s0149 Boechera stricta Bostr.28625s0149 I 0.000
Cagra.0007s0097 Capsella grandiflora Cagra.0007s0097 I 0.000
Cagra.0946s0025 Capsella grandiflora Cagra.0946s0025 I 0.000
Carubv10009816m.g Capsella rubella Carubv10009816m.g I 0.000
Carubv10014211m.g Capsella rubella Carubv10014211m.g I 0.000
Eucgr.F01093 Eucalyptus grandis Eucgr.F01093 I 0.000
evm.TU.supercontig_80.93 Carica papaya evm.TU.supercontig_80.93 I 0.000
gene31149-v1.0-hybrid Fragaria vesca gene31149-v1.0-hybrid I 0.000
Gorai.002G073700 Gossypium raimondii Gorai.002G073700 I 0.000
Gorai.009G433200 Gossypium raimondii Gorai.009G433200 I 0.000
MDP0000262032 Malus domestica MDP0000262032 I 0.000
SapurV1A.0864s0080 Salix purpurea SapurV1A.0864s0080 I 0.000
SapurV1A.1471s0010 Salix purpurea SapurV1A.1471s0010 I 0.000
Thhalv10011676m.g Eutrema salsugineum Thhalv10011676m.g I 0.000
Thhalv10021174m.g Eutrema salsugineum Thhalv10021174m.g I 0.000
GLYMA12G35000 Glycine max GLYMA12G35000 I 0.000
Bo1g128450 Brassica oleracea Bo1g128450 I 0.000
Bo3g066850 Brassica oleracea Bo3g066850 I 0.000
Bo5g127040 Brassica oleracea Bo5g127040 I 0.000
Bo6g030940 Brassica oleracea Bo6g030940 I 0.000
Bra001596 Brassica rapa Bra001596 I 0.000
Bra018998 Brassica rapa Bra018998 I 0.000
Bra021113 Brassica rapa Bra021113 I 0.000
Bra027238 Brassica rapa Bra027238 I 0.000
ANAC019 Arabidopsis lyrata fgenesh2_kg.1__4367__AT1G52890.1 I 0.000
GLYMA06G38410 Glycine max GLYMA06G38410 I 0.000
cassava2098.valid.m1 Manihot esculenta cassava2098.valid.m1 I 0.000
GLYMA13G35550 Glycine max GLYMA13G35550 I 0.000
MTR_2g079990 Medicago truncatula MTR_2g079990 I 0.000
PGSC0003DMG400019294 Solanum tuberosum PGSC0003DMG400019294 I 0.000
PRUPE_ppa008301mg Prunus persica PRUPE_ppa008301mg I 0.000
Solyc07g063410.2 Solanum lycopersicum Solyc07g063410.2 I 0.000
TCM_031364 Theobroma cacao TCM_031364 I 0.000
Cla011949 Citrullus lanatus Cla011949 I 0.000
Pm011603 Prunus mume Pm011603 I 0.000
28219.m000090 Ricinus communis 28219.m000090 I 0.000