POPTR_0001s10410 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0001s10410 T332115_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.510 0.688
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.510 0.688
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s10410.1 Sox 180 248
POPTR_0001s10410.1 Sox 299 365
POPTR_0001s10410.1 Sox 424 492

Links

Other Sox family TFs
Other Populus trichocarpa TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF831 Tursiops truncatus ENSTTRG00000009388 N
ENSPANG00000000370 Papio anubis ENSPANG00000000370 N
ENSPFOG00000008819 Poecilia formosa ENSPFOG00000008819 N
ENSPPYG00000011183 Pongo abelii ENSPPYG00000011183 N
ENSPSIG00000005947 Pelodiscus sinensis ENSPSIG00000005947 N
ZNF831 Pan troglodytes ENSPTRG00000013683 N
ZNF831 Pteropus vampyrus ENSPVAG00000005227 N
Zfp831 Rattus norvegicus ENSRNOG00000024693 N
ENSSHAG00000011841 Sarcophilus harrisii ENSSHAG00000011841 N
ZNF831 Sus scrofa ENSSSCG00000007526 N
ENSSTOG00000020220 Ictidomys tridecemlineatus ENSSTOG00000020220 N
ENSTGUG00000008011 Taeniopygia guttata ENSTGUG00000008011 N
ZNF831 Otolemur garnettii ENSOGAG00000026401 N
ENSXMAG00000013985 Xiphophorus maculatus ENSXMAG00000013985 N
Aan_R015780 Calypte anna Aan_R015780 N
Alligator_sinensis_CCG021728.1 Alligator sinensis Alligator_sinensis_CCG021728.1 N
Brh_R000153 Buceros rhinoceros Brh_R000153 N
Cmyd_10020478 Chelonia mydas Cmyd_10020478 N
ENSP00000360069-D1 Bos grunniens ENSP00000360069-D1 N
ENSP00000360069 Macaca fascicularis ENSP00000360069 N
Gfo_R009549 Geospiza fortis Gfo_R009549 N
Myotis_brandtii_ZNF831_10023550 Myotis brandtii Myotis_brandtii_ZNF831_10023550 N
Ogr15311 Ophisaurus gracilis Ogr15311 N
Tal_R006729 Tyto alba Tal_R006729 N
ENSGACG00000011250 Gasterosteus aculeatus ENSGACG00000011250 N
ENSAMXG00000025035 Astyanax mexicanus ENSAMXG00000025035 N
ZNF831 Bos taurus ENSBTAG00000011940 N
ZNF831 Canis familiaris ENSCAFG00000012242 N
ZNF831 Cavia porcellus ENSCPOG00000004730 N
ENSCSAG00000015605 Chlorocebus sabaeus ENSCSAG00000015605 N
ZNF831 Dasypus novemcinctus ENSDNOG00000039522 N
ENSDORG00000000484 Dipodomys ordii ENSDORG00000000484 N
ZNF831 Equus caballus ENSECAG00000004219 N
ENSFALG00000010699 Ficedula albicollis ENSFALG00000010699 N
ZNF831 Felis catus ENSFCAG00000000850 N
ZNF831 Homo sapiens ENSG00000124203 N
ENSACAG00000001074 Anolis carolinensis ENSACAG00000001074 N
ZNF831 Gorilla gorilla ENSGGOG00000016623 N
ENSGMOG00000017750 Gadus morhua ENSGMOG00000017750 N
ZNF831 Loxodonta africana ENSLAFG00000027534 N
ENSMEUG00000011902 Macropus eugenii ENSMEUG00000011902 N
ENSMGAG00000015550 Meleagris gallopavo ENSMGAG00000015550 N
ZNF831 Myotis lucifugus ENSMLUG00000002710 N
ENSMPUG00000007096 Mustela putorius furo ENSMPUG00000007096 N
Zfp831 Mus musculus ENSMUSG00000050600 N
ENSNLEG00000009590 Nomascus leucogenys ENSNLEG00000009590 N
ENSOARG00000016025 Ovis aries ENSOARG00000016025 N
ZNF831 Oryctolagus cuniculus ENSOCUG00000016865 N