POPTR_0018s12990 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0018s12990 T332141_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.741 0.977
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.741 0.977
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.707 0.909
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.630 0.682
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.630 0.682
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s12990.1 Sox 113 156

Links

Other Sox family TFs
Other Populus trichocarpa TFs

531 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_2BL_24E6E8DF9 Triticum aestivum Traes_2BL_24E6E8DF9 I
BGIOSGA005950 Oryza indica BGIOSGA005950 I
ORGLA04G0171200 Oryza glaberrima ORGLA04G0171200 I
ORUFI02G27110 Oryza rufipogon ORUFI02G27110 I
ORUFI04G21580 Oryza rufipogon ORUFI04G21580 I
OS02G0643600 Oryza sativa OS02G0643600 I
OS04G0536500 Oryza sativa OS04G0536500 I
Sb04g033570 Sorghum bicolor Sb04g033570 I
Sb06g023780 Sorghum bicolor Sb06g023780 I
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I
Si010504m.g Setaria italica Si010504m.g I
Si017679m.g Setaria italica Si017679m.g I
Solyc08g079120.1 Solanum lycopersicum Solyc08g079120.1 I
Traes_2AL_82C3E7E14 Triticum aestivum Traes_2AL_82C3E7E14 I
OPUNC04G17680 Oryza punctata OPUNC04G17680 I
Traes_2DL_343FA6101 Triticum aestivum Traes_2DL_343FA6101 I
Traes_4AL_F853C8660 Triticum aestivum Traes_4AL_F853C8660 I
Traes_6AL_BB7207AD1 Triticum aestivum Traes_6AL_BB7207AD1 I
Traes_6BL_8F77BF933 Triticum aestivum Traes_6BL_8F77BF933 I
Traes_6DL_D0BE06357 Triticum aestivum Traes_6DL_D0BE06357 I
Traes_7AS_6398221B7 Triticum aestivum Traes_7AS_6398221B7 I
Traes_7DS_7F0AF83B0 Triticum aestivum Traes_7DS_7F0AF83B0 I
TRIUR3_08851 Triticum urartu TRIUR3_08851 I
TRIUR3_20707 Triticum urartu TRIUR3_20707 I
Gorai.003G169000 Gossypium raimondii Gorai.003G169000 I
Pavir.Gb00744 Panicum virgatum Pavir.Gb00744 I
Pavir.J07126 Panicum virgatum Pavir.J07126 I
Pavir.J39804 Panicum virgatum Pavir.J39804 I
MLOC_53086 Hordeum vulgare MLOC_53086 I
BGIOSGA014649 Oryza indica BGIOSGA014649 I
BRADI1G52187 Brachypodium distachyon BRADI1G52187 I
BRADI3G50067 Brachypodium distachyon BRADI3G50067 I
F775_07224 Aegilops tauschii F775_07224 I
F775_08057 Aegilops tauschii F775_08057 I
GRMZM2G178998 Zea mays GRMZM2G178998 I
GRMZM2G315140 Zea mays GRMZM2G315140 I
GRMZM2G354151 Zea mays GRMZM2G354151 I
GSMUA_Achr11G17510_001 Musa acuminata GSMUA_Achr11G17510_001 I
GSMUA_Achr8G11590_001 Musa acuminata GSMUA_Achr8G11590_001 I
LPERR02G21010 Leersia perrieri LPERR02G21010 I
LPERR04G16200 Leersia perrieri LPERR04G16200 I
MLOC_15746 Hordeum vulgare MLOC_15746 I
OPUNC02G23550 Oryza punctata OPUNC02G23550 I
MLOC_56103 Hordeum vulgare MLOC_56103 I
OB02G33070 Oryza brachyantha OB02G33070 I
OB04G27030 Oryza brachyantha OB04G27030 I
OBART02G25700 Oryza barthii OBART02G25700 I
OBART04G20020 Oryza barthii OBART04G20020 I
OGLUM02G26220 Oryza glumaepatula OGLUM02G26220 I
OGLUM04G19900 Oryza glumaepatula OGLUM04G19900 I
OLONG_018618 Oryza longistaminata OLONG_018618 I
OMERI02G25220 Oryza meridionalis OMERI02G25220 I
OMERI03G30800 Oryza meridionalis OMERI03G30800 I
ONIVA02G28150 Oryza nivara ONIVA02G28150 I
ONIVA04G18230 Oryza nivara ONIVA04G18230 I
OLONG_005741 Oryza longistaminata OLONG_005741 N
Pavir.J09314 Panicum virgatum Pavir.J09314 N