VIT_02s0025g01220 (Vitis vinifera)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 VIT_02s0025g01220 T333231_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.476 0.683
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.476 0.683
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_02s0025g01220.t01 Sox 180 245
VIT_02s0025g01220.t01 Sox 296 362
VIT_02s0025g01220.t01 Sox 425 493

Links

Other Sox family TFs
Other Vitis vinifera TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MELLADRAFT_104422 Melampsora laricipopulina MELLADRAFT_104422 I 0.000
GYMLUDRAFT_42922 Gymnopus luxurians GYMLUDRAFT_42922 I 0.000
GYMLUDRAFT_45397 Gymnopus luxurians GYMLUDRAFT_45397 I 0.000
JAAARDRAFT_30847 Jaapia argillacea JAAARDRAFT_30847 I 0.000
K443DRAFT_2600 Laccaria amethystina K443DRAFT_2600 I 0.000
K443DRAFT_674079 Laccaria amethystina K443DRAFT_674079 I 0.000
LACBIDRAFT_317135 Laccaria bicolor LACBIDRAFT_317135 I 0.000
M413DRAFT_310281 Hebeloma cylindrosporum M413DRAFT_310281 I 0.000
M413DRAFT_445487 Hebeloma cylindrosporum M413DRAFT_445487 I 0.000
M413DRAFT_446984 Hebeloma cylindrosporum M413DRAFT_446984 I 0.000
AGABI2DRAFT_187697 Agaricus bisporus AGABI2DRAFT_187697 I 0.000
Moror_11062 Moniliophthora roreri Moror_11062 I 0.000
Moror_17515 Moniliophthora roreri Moror_17515 I 0.000
Moror_4700 Moniliophthora roreri Moror_4700 I 0.000
PHLGIDRAFT_32525 Phlebiopsis gigantea PHLGIDRAFT_32525 I 0.000
PLEOSDRAFT_30253 Pleurotus ostreatus PLEOSDRAFT_30253 I 0.000
SCHCODRAFT_111379 Schizophyllum commune SCHCODRAFT_111379 I 0.000
SCHCODRAFT_258888 Schizophyllum commune SCHCODRAFT_258888 I 0.000
SCHCODRAFT_63410 Schizophyllum commune SCHCODRAFT_63410 I 0.000
SCLCIDRAFT_13431 Scleroderma citrinum SCLCIDRAFT_13431 I 0.000
CC1G_15575 Coprinopsis cinerea CC1G_15575 I 0.000
FOMPIDRAFT_148963 Fomitopsis pinicola FOMPIDRAFT_148963 I 0.000
CERSUDRAFT_112795 Ceriporiopsis subvermispora CERSUDRAFT_112795 I 0.000
AGABI2DRAFT_222360 Agaricus bisporus AGABI2DRAFT_222360 I 0.000
GALMADRAFT_96046 Galerina marginata GALMADRAFT_96046 I 0.000
GALMADRAFT_222679 Galerina marginata GALMADRAFT_222679 I 0.000
PLICRDRAFT_47417 Plicaturopsis crispa PLICRDRAFT_47417 N 0.000
POSPLDRAFT_92181 Postia placenta POSPLDRAFT_92181 N 0.000
POSPLDRAFT_92179 Postia placenta POSPLDRAFT_92179 N 0.000
POSPLDRAFT_92176 Postia placenta POSPLDRAFT_92176 N 0.000
POSPLDRAFT_92174 Postia placenta POSPLDRAFT_92174 N 0.000
POSPLDRAFT_101241 Postia placenta POSPLDRAFT_101241 N 0.000
PLICRDRAFT_47428 Plicaturopsis crispa PLICRDRAFT_47428 N 0.000
POSPLDRAFT_97463 Postia placenta POSPLDRAFT_97463 N 0.000
PLEOSDRAFT_1034000 Pleurotus ostreatus PLEOSDRAFT_1034000 N 0.000
PISMIDRAFT_680566 Pisolithus microcarpus PISMIDRAFT_680566 N 0.000
PISMIDRAFT_100858 Pisolithus microcarpus PISMIDRAFT_100858 N 0.000
PILCRDRAFT_824811 Piloderma croceum PILCRDRAFT_824811 N 0.000
PILCRDRAFT_723293 Piloderma croceum PILCRDRAFT_723293 N 0.000
PILCRDRAFT_142493 Piloderma croceum PILCRDRAFT_142493 N 0.000
POSPLDRAFT_92233 Postia placenta POSPLDRAFT_92233 N 0.000
POSPLDRAFT_97457 Postia placenta POSPLDRAFT_97457 N 0.000
POSPLDRAFT_97461 Postia placenta POSPLDRAFT_97461 N 0.000
PHLGIDRAFT_127425 Phlebiopsis gigantea PHLGIDRAFT_127425 N 0.000
SCHCODRAFT_102295 Schizophyllum commune SCHCODRAFT_102295 N 0.000
BN946_scf184969.g81 Trametes cinnabarina BN946_scf184969.g81 N 0.000
SCHCODRAFT_269946 Schizophyllum commune SCHCODRAFT_269946 N 0.000
SCHCODRAFT_57027 Schizophyllum commune SCHCODRAFT_57027 N 0.000
SCLCIDRAFT_1222350 Scleroderma citrinum SCLCIDRAFT_1222350 N 0.000
AGABI2DRAFT_118399 Agaricus bisporus AGABI2DRAFT_118399 N 0.000
SERLA73DRAFT_177669 Serpula lacrymans SERLA73DRAFT_177669 N 0.000
SERLA73DRAFT_75787 Serpula lacrymans SERLA73DRAFT_75787 N 0.000
SERLA73DRAFT_87647 Serpula lacrymans SERLA73DRAFT_87647 N 0.000
fgenesh1_pg.C_scaffold_4000651 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000651 N 0.000
EuGene6000029 Heterobasidion annosum EuGene6000029 N 0.000
FOMPIDRAFT_1121285 Fomitopsis pinicola FOMPIDRAFT_1121285 N 0.000
GYMLUDRAFT_204658 Gymnopus luxurians GYMLUDRAFT_204658 N 0.000
GLOTRDRAFT_139640 Gloeophyllum trabeum GLOTRDRAFT_139640 N 0.000
GLOTRDRAFT_137935 Gloeophyllum trabeum GLOTRDRAFT_137935 N 0.000
HETIRDRAFT_327516 Heterobasidion irregulare HETIRDRAFT_327516 N 0.000
HETIRDRAFT_459850 Heterobasidion irregulare HETIRDRAFT_459850 N 0.000
HYDPIDRAFT_175933 Hydnomerulius pinastri HYDPIDRAFT_175933 N 0.000
JAAARDRAFT_123795 Jaapia argillacea JAAARDRAFT_123795 N 0.000
JAAARDRAFT_157067 Jaapia argillacea JAAARDRAFT_157067 N 0.000
JAAARDRAFT_36304 Jaapia argillacea JAAARDRAFT_36304 N 0.000
FOMPIDRAFT_151847 Fomitopsis pinicola FOMPIDRAFT_151847 N 0.000
K443DRAFT_679409 Laccaria amethystina K443DRAFT_679409 N 0.000
M404DRAFT_13375 Pisolithus tinctorius M404DRAFT_13375 N 0.000
M404DRAFT_997690 Pisolithus tinctorius M404DRAFT_997690 N 0.000
M404DRAFT_997743 Pisolithus tinctorius M404DRAFT_997743 N 0.000
M408DRAFT_325522 Serendipita vermifera M408DRAFT_325522 N 0.000
CERSUDRAFT_112798 Ceriporiopsis subvermispora CERSUDRAFT_112798 N 0.000
DICSQDRAFT_156876 Dichomitus squalens DICSQDRAFT_156876 N 0.000
M413DRAFT_446927 Hebeloma cylindrosporum M413DRAFT_446927 N 0.000
CY34DRAFT_804702 Suillus luteus CY34DRAFT_804702 N 0.000
CY34DRAFT_803634 Suillus luteus CY34DRAFT_803634 N 0.000
CY34DRAFT_797799 Suillus luteus CY34DRAFT_797799 N 0.000
Moror_14051 Moniliophthora roreri Moror_14051 N 0.000
CERSUDRAFT_145919 Ceriporiopsis subvermispora CERSUDRAFT_145919 N 0.000
CERSUDRAFT_114708 Ceriporiopsis subvermispora CERSUDRAFT_114708 N 0.000
Moror_6764 Moniliophthora roreri Moror_6764 N 0.000
PAXRUDRAFT_822949 Paxillus rubicundulus PAXRUDRAFT_822949 N 0.000
PAXRUDRAFT_827363 Paxillus rubicundulus PAXRUDRAFT_827363 N 0.000
PAXRUDRAFT_9870 Paxillus rubicundulus PAXRUDRAFT_9870 N 0.000
PHACADRAFT_208392 Phanerochaete carnosa PHACADRAFT_208392 N 0.000
GLOTRDRAFT_80766 Gloeophyllum trabeum GLOTRDRAFT_80766 N 0.000
PHLGIDRAFT_175743 Phlebiopsis gigantea PHLGIDRAFT_175743 N 0.000