Afo_R001715 (Aptenodytes forsteri)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Afo_R001715 T333530_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hbp1
M00194_2.00 		Mus musculus
NNNDDNNN
NNNHHNNN		 PBM
Badis et al.(2009)
Hbp1_2241 		0.741 1.000
HBP1
M11299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HBP1_Q2 		0.741 1.000
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R001715 Sox 437 504

Links

Other Sox family TFs
Other Aptenodytes forsteri TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH80 Arabidopsis thaliana AT1G35460 D
mgf002701m Mimulus guttatus mgf002701m I
PK14093.1 Cannabis sativa PK14093.1 I
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I
Carubv10001721m.g Capsella rubella Carubv10001721m.g I
Carubv10010050m.g Capsella rubella Carubv10010050m.g I
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I
MDP0000269890 Malus domestica MDP0000269890 I
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I
PK06301.1 Cannabis sativa PK06301.1 I
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I
GLYMA08G26110 Glycine max GLYMA08G26110 I
BHLH81 Arabidopsis thaliana AT4G09180 I
Bo5g085170 Brassica oleracea Bo5g085170 I
Bo6g043840 Brassica oleracea Bo6g043840 I
Bo8g026850 Brassica oleracea Bo8g026850 I
Bra028088 Brassica rapa Bra028088 I
Bra034421 Brassica rapa Bra034421 I
Bra036760 Brassica rapa Bra036760 I
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I
Cucsa.061590 Cucumis sativus Cucsa.061590 I
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I
TCM_036484 Theobroma cacao TCM_036484 I
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I
Pm004181 Prunus mume Pm004181 I
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I