Ca_04825 (Cicer arietinum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ca_04825 T333586_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.646 0.870
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.441 0.478
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.441 0.478
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.441 0.435
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.441 0.435
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_04825 Sox 45 114

Links

Other Sox family TFs
Other Cicer arietinum TFs

295 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA03G29940 Glycine max GLYMA03G29940 I
GLYMA19G32850 Glycine max GLYMA19G32850 I
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I
GLYMA02G30800 Glycine max GLYMA02G30800 N
MTR_7g093030 Medicago truncatula MTR_7g093030 N
mgf015795m Mimulus guttatus mgf015795m N
mgf017208m Mimulus guttatus mgf017208m N
Ciclev10012556m.g Citrus clementina Ciclev10012556m.g N