Ca_04825 (Cicer arietinum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ca_04825 T333586_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.646 0.870
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.441 0.478
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.441 0.478
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.441 0.435
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.441 0.435
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_04825 Sox 45 114

Links

Other Sox family TFs
Other Cicer arietinum TFs

295 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CHGG_01519 Chaetomium globosum CHGG_01519 I
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.611
MDP0000242568 Malus domestica MDP0000242568 I
W97_04494 Coniosporium apollinis W97_04494 I
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.609
LEMA_P074670.1 Leptosphaeria maculans LEMA_P074670.1 I
HMG20B Pan troglodytes ENSPTRG00000010268 I
HMG20A Callithrix jacchus ENSCJAG00000011131 I
CTRG_00206 Candida tropicalis CTRG_00206 I
SVUK_0000827101 Strongylus vulgaris SVUK_0000827101 N
SBAD_0001127201 Soboliphyme baturini SBAD_0001127201 N
TMUE_s0023006500 Trichuris muris TMUE_s0023006500 N
GPLIN_000847800 Globodera pallida GPLIN_000847800 N
DILT_0001977801 Diphyllobothrium latum DILT_0001977801 N
D918_01415 Trichuris suis D918_01415 N
D917_08464 Trichinella nativa D917_08464 N
BGLB013830 Biomphalaria glabrata BGLB013830 N
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N
LCUP018488 Lucilia cuprina LCUP018488 N
EFA77534.1 Polysphondylium pallidum EFA77534.1 N
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N
TTRE_0000149701 Trichuris trichiura TTRE_0000149701 N
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N
gw1.88.46.1 Fragilariopsis cylindrus gw1.88.46.1 N
UV8b_5742 Ustilaginoidea virens UV8b_5742 N
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N
PFICI_01816 Pestalotiopsis fici PFICI_01816 N
MLOC_68913 Hordeum vulgare MLOC_68913 N
MCINX003696 Melitaea cinxia MCINX003696 N
MAC_01051 Metarhizium acridum MAC_01051 N
HelroG167700 Helobdella robusta HelroG167700 N
GLYMA20G01570 Glycine max GLYMA20G01570 N
SMARCE1 Gasterosteus aculeatus ENSGACG00000018114 N
ENSCJAG00000006608 Callithrix jacchus ENSCJAG00000006608 N
Cob_06475 Colletotrichum orbiculare Cob_06475 N