30174.m008839 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 30174.m008839 T333898_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.712 0.977
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.727
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.727
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.678 0.909
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.678 0.909
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.727
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30174.m008839 Sox 36 79

Links

Other Sox family TFs
Other Ricinus communis TFs

529 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF205 Homo sapiens ENSG00000122386 D
ZNF205 Pteropus vampyrus ENSPVAG00000001475 I
ENSNLEG00000009600 Nomascus leucogenys ENSNLEG00000009600 I
ENSOARG00000001319 Ovis aries ENSOARG00000001319 I
ZNF205 Otolemur garnettii ENSOGAG00000003693 I
ZNF205 Ochotona princeps ENSOPRG00000005820 I
ENSPANG00000024398 Papio anubis ENSPANG00000024398 I
ENSPPYG00000007034 Pongo abelii ENSPPYG00000007034 I
ZNF205 Pan troglodytes ENSPTRG00000007686 I
Zfp13 Mus musculus ENSMUSG00000062012 I
Zfp13 Rattus norvegicus ENSRNOG00000003455 I
ZNF205 Sorex araneus ENSSARG00000006551 I
ZNF205 Sus scrofa ENSSSCG00000029375 I
ENSSTOG00000003803 Ictidomys tridecemlineatus ENSSTOG00000003803 I
ENSBTAP00000007323-D1 Bos grunniens ENSBTAP00000007323-D1 I
ENSP00000219091 Macaca fascicularis ENSP00000219091 I
Myotis_brandtii_ZNF205_10028065 Myotis brandtii Myotis_brandtii_ZNF205_10028065 I
ENSAMEG00000010576 Ailuropoda melanoleuca ENSAMEG00000010576 I
ENSMPUG00000015184 Mustela putorius furo ENSMPUG00000015184 I
ZNF205 Macaca mulatta ENSMMUG00000009487 I
ZNF205 Microcebus murinus ENSMICG00000009089 I
ENSMEUG00000004328 Macropus eugenii ENSMEUG00000004328 I
ZNF205 Loxodonta africana ENSLAFG00000021564 I
ZNF205 Gorilla gorilla ENSGGOG00000012036 I
ZNF205 Felis catus ENSFCAG00000026028 I
ENSETEG00000002476 Echinops telfairi ENSETEG00000002476 I
ZNF205 Erinaceus europaeus ENSEEUG00000010049 I
ZNF205 Equus caballus ENSECAG00000009869 I
ENSCSAG00000010150 Chlorocebus sabaeus ENSCSAG00000010150 I
ZNF205 Callithrix jacchus ENSCJAG00000015546 I
ZNF205 Canis familiaris ENSCAFG00000023869 I
ZNF205 Bos taurus ENSBTAG00000005572 I