cassava18626.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava18626.valid.m1 T333925_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.630 0.739
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18626.valid.m1 Sox 38 107

Links

Other Sox family TFs
Other Manihot esculenta TFs

318 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01931 Capronia coronata A1O1_01931 N 0.000
A1O5_06915 Cladophialophora psammophila A1O5_06915 N 0.000
A1O7_05076 Cladophialophora yegresii A1O7_05076 N 0.000
A1O9_10584 Exophiala aquamarina A1O9_10584 N 0.000
A1O9_13030 Exophiala aquamarina A1O9_13030 N 0.000
G647_03586 Cladophialophora carrionii G647_03586 N 0.000
HMPREF1120_03433 Exophiala dermatitidis HMPREF1120_03433 N 0.000
HMPREF1541_08871 Cyphellophora europaea HMPREF1541_08871 N 0.000
PV04_04136 Capronia semiimmersa PV04_04136 N 0.000
PV05_02453 Exophiala xenobiotica PV05_02453 N 0.000
PV07_04943 Cladophialophora immunda PV07_04943 N 0.000
Z517_06070 Fonsecaea pedrosoi Z517_06070 N 0.000
Z519_06584 Cladophialophora bantiana Z519_06584 N 0.000