fgenesh2_pg.scaffold_179000049 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.scaffold_179000049 T334147_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_179000049 Sox 355 411

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_pg.C_1860002 Branchiostoma floridae estExt_fgenesh2_pg.C_1860002 N 0.496
fgenesh2_pg.scaffold_112000058 Branchiostoma floridae fgenesh2_pg.scaffold_112000058 N 0.488
fgenesh2_pg.scaffold_207000008 Branchiostoma floridae fgenesh2_pg.scaffold_207000008 N 0.551
fgenesh2_pg.scaffold_26000073 Branchiostoma floridae fgenesh2_pg.scaffold_26000073 N 0.460
fgenesh2_pg.scaffold_300000030 Branchiostoma floridae fgenesh2_pg.scaffold_300000030 N 0.416
fgenesh2_pg.scaffold_67000039 Branchiostoma floridae fgenesh2_pg.scaffold_67000039 N 0.559
fgenesh2_pg.scaffold_67000042 Branchiostoma floridae fgenesh2_pg.scaffold_67000042 N 0.478