Carubv10012681m.g (Capsella rubella)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Carubv10012681m.g T334421_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.662 0.710
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012681m Sox 35 104

Links

Other Sox family TFs
Other Capsella rubella TFs

311 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M404DRAFT_1005658 Pisolithus tinctorius M404DRAFT_1005658 I 0.000
LACBIDRAFT_317921 Laccaria bicolor LACBIDRAFT_317921 I 0.000
M413DRAFT_446153 Hebeloma cylindrosporum M413DRAFT_446153 I 0.000
LACBIDRAFT_296682 Laccaria bicolor LACBIDRAFT_296682 I 0.000
GALMADRAFT_256803 Galerina marginata GALMADRAFT_256803 I 0.000
M413DRAFT_446160 Hebeloma cylindrosporum M413DRAFT_446160 I 0.000
PEX1_105370 Penicillium expansum PEX1_105370 N 0.000
M413DRAFT_412939 Hebeloma cylindrosporum M413DRAFT_412939 N 0.000
PAXINDRAFT_100848 Paxillus involutus PAXINDRAFT_100848 N 0.000
PAXRUDRAFT_10160 Paxillus rubicundulus PAXRUDRAFT_10160 N 0.000
estExt_fgenesh3_kg.C_170048 Heterobasidion annosum estExt_fgenesh3_kg.C_170048 N 0.000
PILCRDRAFT_789690 Piloderma croceum PILCRDRAFT_789690 N 0.000
PITC_009530 Penicillium italicum PITC_009530 N 0.000
PLICRDRAFT_57185 Plicaturopsis crispa PLICRDRAFT_57185 N 0.000
PV06_01512 Exophiala oligosperma PV06_01512 N 0.000
UREG_01426 Uncinocarpus reesii UREG_01426 N 0.000
CIMG_02319 Coccidioides immitis CIMG_02319 N 0.000
M378DRAFT_163769 Amanita muscaria M378DRAFT_163769 N 0.000
LACBIDRAFT_315220 Laccaria bicolor LACBIDRAFT_315220 N 0.000
LACBIDRAFT_296690 Laccaria bicolor LACBIDRAFT_296690 N 0.000
K443DRAFT_683893 Laccaria amethystina K443DRAFT_683893 N 0.000
K443DRAFT_683891 Laccaria amethystina K443DRAFT_683891 N 0.000
HYDPIDRAFT_117261 Hydnomerulius pinastri HYDPIDRAFT_117261 N 0.000
HETIRDRAFT_439816 Heterobasidion irregulare HETIRDRAFT_439816 N 0.000
GLOTRDRAFT_117339 Gloeophyllum trabeum GLOTRDRAFT_117339 N 0.000
FIBRA_02145 Fibroporia radiculosa FIBRA_02145 N 0.000
E5Q_05532 Mixia osmundae E5Q_05532 N 0.000
CPC735_039690 Coccidioides posadasii CPC735_039690 N 0.000
CERSUDRAFT_119740 Ceriporiopsis subvermispora CERSUDRAFT_119740 N 0.000
BOTBODRAFT_138635 Botryobasidium botryosum BOTBODRAFT_138635 N 0.000